BAC Information

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BAC

Clone NameMSMg01-299L14
Chromosome12 (Build37)
Map Location 40,822,215 - 40,973,859
singlet/doubletdoublet
Overlap geneScin, Gm889, Ifrd1, EG629820
Upstream geneLOC100043148, Arl4a, LOC100043606
Downstream geneZfp277, Dock4, LOC638487, LOC100043157, LOC100043162
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-299L14.T7 (MSMg01no299_l14.b1)MSMg01-299L14.TJ (MSMg01no299_l14.g1)
ACCAG426417AG426418
length743740
length of high quality
(start - end)		582 (38 - 619)611 (68 - 678)
definitionCHROMAT_FILE: MSMg01no299_l14.b1 PHD_FILE: MSMg01no299_l14.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:36:43 2005CHROMAT_FILE: MSMg01no299_l14.g1 PHD_FILE: MSMg01no299_l14.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:36:43 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(40,973,282 - 40,973,859)(40,822,215 - 40,822,825)
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCTGT
AGATTTACCATAGGTCTAGATTCTTCCAGTCACTTAAGACAGGAGGGTAT
ATACTGCAGACTAGATAAGCATACAGCACACTGTGTGCCCACCGTCTCTT
ACTCTCTGAAGTTAGACATTTACAGTAACTGAGTGCAATGGCAGAGGTAA
GGCATTGCTTTCCAAAAGTTAGCAGCTGTACACATTGTTGTCAGAATCAA
ACTCACTGATGGCAAAGGACTGCTATTGCTTCTTTCCTTATCCTTACCTG
TAGGTATGTAGAAAGTGACCTTTATGTACTGCACTGAGAATGTGTAAATA
GAGAGGCGAGGGTGACTGAGGCAGTCTCCCCTGAAGACTGATACTCTTTC
CTACATAAGTGATGTCTCTTACTTTGCCAATTGGAGACTAGGAAGGAATG
CCTCTGACATGAACGTGGCTGGGGGTGTAGTCAGGTCAAGGTGGGAAGCT
TCAGTGTTTACAAAGCTGGTGGGTTATCTACATTTCCCAACCTGCCTGCT
TTCTTTCTCTCTAAATTGCCTTTTTCCTTTCTTCCAGCTGTGTAAGCAGA
TGTATCCTGGATTTAAGACTAAAATTTGGAGGCTTAAGCCTCCAAATGTA
AAAGAATCTCTTTCTCTGTTGCTGGTGTTGTCAAACAAACTAGATATTCT
TCCTTTGAGGAAACCAAGTGAAGCAAACCCCCTCTGTAGTTCT

GTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXCTGAGACATAGGCTTGCAGGTTGAGCCTTGTAG
TCACCTCAGCCTTCCACGGGCCAGCTCCCAAACATGTTCTGCAACACCTC
CGGAACTGAGGCCCAGCAACTGCTCCAGGAATCACTAACATGTGGCTGTC
ACATTTGACCCTTACCTGTGTTATCAGGAGCATCTTCCAGATCACAACAG
TCCTGTCTCTGAGTCAGGTTTCGGGGGGGACACAGTCCATAGGAGAGGGT
AATAAATGGATCCATGTCATAGAAGCAGCTCCTTCTATAAAGCCCATGGA
AGGTGCCACTCACAGGGAAAGAGCTACCATGATGGCAGTTATTATTCTTT
CAGAGCAAATAACATAATCTATTTAATTATGTAGTTTCTAAATAAATAAA
AATTTATGCTACCAAGATAATTGCATTGAGGATTATTGAGAACTAAGAGG
AAAATTCATCCTATGATGAGCAGGCTCTGCCTTACAGACCATTGTCTGCA
GAGTTCCAAGGCAGACAGTGAGCATTGCAAGTCAACTGTAGGGCACTCGC
TACTCTCTTCAGTCCCAAAGTATCATATTTTACTCACATACATGCATGCT
ACCATTAAAATTTTTATTTTCATTAGTAGTAAACATTTTAGTTTATTCAG
GATAACAAACACTAGTATTTAATTTCTAGAGTATCAACAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no299_l14.b1 MSMg01no299_l14.b1 CHROMAT_FILE:
MSMg01no299_l14.b1 PHD_FILE: MSMg01no299_l14.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:36:43 2005
         (582 letters)



>mm_chr12_40973078_40974059
          Length = 982

 Score = 1056 bits (546), Expect = 0.0
 Identities = 570/578 (98%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattctgtagatttaccataggtctagattcttccagtcacttaagacaggagggtata 64
           ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 782 gaattctgtagatttactataggtctagattcttccagtcacttaagacaggagggtata 723

                                                                       
Query: 65  tactgcagactagataagcatacagcacactgtgtgcccaccgtctcttactctctgaag 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 722 tactgcagactagataagcatacagcacactgtgtgcccaccgtctcttactctctgaag 663

                                                                       
Query: 125 ttagacatttacagtaactgagtgcaatggcagaggtaaggcattgctttccaaaagtta 184
           |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 662 ttagacatttacagtaactgagtgcaatggcagaggtagggcattgctttccaaaagtta 603

                                                                       
Query: 185 gcagctgtacacattgttgtcagaatcaaactcactgatggcaaaggactgctattgctt 244
           |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 602 gcagctgtacacattgttgtcagaatcaaactcactgatggcaaaggattgctattgctt 543

                                                                       
Query: 245 ctttccttatccttacctgtaggtatgtagaaagtgacctttatgtactgcactgagaat 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 542 ctttccttatccttacctgtaggtatgtagaaagtgacctttatgtactgcactgagaat 483

                                                                       
Query: 305 gtgtaaatagagaggcgagggtgactgaggcagtctcccctgaagactgatactctttcc 364
           ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 482 gtgtaaatagagaggcgagggtgactgaggcagtctctcctgaagactgatactctttcc 423

                                                                       
Query: 365 tacataagtgatgtctcttactttgccaattggagactaggaaggaatgcctctgacatg 424
           || |||||||||||||||||||||||||||||||||||||||||||||| |||||| |||
Sbjct: 422 tatataagtgatgtctcttactttgccaattggagactaggaaggaatggctctgagatg 363

                                                                       
Query: 425 aacgtggctgggggtgtagtcaggtcaaggtgggaagcttcagtgtttacaaagctggtg 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 362 aacgtggctgggggtgtagtcaggtcaaggtgggaagcttcagtgtttacaaagctggtg 303

                                                                       
Query: 485 ggttatctacatttcccaacctgcctgctttctttctctctaaattgcctttttcctttc 544
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 302 ggttatctacatttcccaacctgcctgctttctttctctctaaattgcctttttcctttc 243

                                                 
Query: 545 ttccagctgtgtaagcagatgtatcctggatttaagac 582
           || |||||||||||||||||||||||||||||||||||
Sbjct: 242 tttcagctgtgtaagcagatgtatcctggatttaagac 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 582
Length of database: 982
Length adjustment: 10
Effective length of query: 572
Effective length of database: 972
Effective search space:   555984
Effective search space used:   555984
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no299_l14.g1 MSMg01no299_l14.g1 CHROMAT_FILE:
MSMg01no299_l14.g1 PHD_FILE: MSMg01no299_l14.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:36:43 2005
         (611 letters)



>mm_chr12_40822015_40823025
          Length = 1011

 Score = 1089 bits (563), Expect = 0.0
 Identities = 599/611 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   ctgagacataggcttgcaggttgagccttgtagtcacctcagccttccacgggccagctc 60
           ||||||||||||||||||||| || |||||||||||||||||||||||| ||||||||||
Sbjct: 201 ctgagacataggcttgcaggtcgaaccttgtagtcacctcagccttccatgggccagctc 260

                                                                       
Query: 61  ccaaacatgttctgcaacacctccggaactgaggcccagcaactgctccaggaatcacta 120
           ||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||
Sbjct: 261 ccaaacatgttctgcaacacctctggaactgaggcccagcaactgctccatgaatcacta 320

                                                                       
Query: 121 acatgtggctgtcacatttgacccttacctgtgttatcaggagcatcttccagatcacaa 180
           |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 321 acatgtggctgtcacatttgacccttacctatgttatcaggagcatcttccagatcacaa 380

                                                                       
Query: 181 cagtcctgtctctgagtcaggtttcgggggggacacagtccataggagagggtaataaat 240
           |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 381 cagtcctgtctctgagtcaggtttcgggggggacacagtccaaaggagagggtaataaat 440

                                                                       
Query: 241 ggatccatgtcatagaagcagctccttctataaagcccatggaaggtgccactcacaggg 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ggatccatgtcatagaagcagctccttctataaagcccatggaaggtgccactcacaggg 500

                                                                       
Query: 301 aaagagctaccatgatggcagttattattctttcagagcaaataacataatctatttaat 360
           ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 501 aaagagctaccatgatggcagttattattctttcagagcaaataaaataatctatttaat 560

                                                                       
Query: 361 tatgtagtttctaaataaataaaaatttatgctaccaagataattgcattgaggattatt 420
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 561 tatgtagtttctaaataaataaaaatttatgctaccaagataattgcattgaggatgatt 620

                                                                       
Query: 421 gagaactaagaggaaaattcatcctatgatgagcaggctctgccttacagaccattgtct 480
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 gagaactaagaggaaagttcatcctatgatgagcaggctctgccttacagaccattgtct 680

                                                                       
Query: 481 gcagagttccaaggcagacagtgagcattgcaagtcaactgtagggcactcgctactctc 540
           |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 681 gcagagttccaaggcagacagtgagcattgcaagtcaactgtagggcactggctactctc 740

                                                                       
Query: 541 ttcagtcccaaagtatcatattttactcacatacatgcatgctaccattaaaatttttat 600
           |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 741 ttcagtcccaaagtatcatattttactcacatacatgcatgctaccatcaaaatttttat 800

                      
Query: 601 tttcattagta 611
           |||||||||||
Sbjct: 801 tttcattagta 811


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 611
Length of database: 1011
Length adjustment: 10
Effective length of query: 601
Effective length of database: 1001
Effective search space:   601601
Effective search space used:   601601
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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