BAC Information

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BAC

Clone NameMSMg01-300P06
Chromosome12 (Build37)
Map Location 12,535,082 - 12,535,273
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC217390, LOC628327, LOC627110, LOC100043209, D12Ertd553e
Downstream geneLOC100043215, Mycn, EG668473, LOC628449, Ddx1, LOC627199, LOC627189, LOC100043243
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-300P06.T7 (MSMg01no300_p06.b1)MSMg01-300P06.TJ (MSMg01no300_p06.g1)
ACCAG427290AG427291
length736763
length of high quality
(start - end)
192 (131 - 322)---
definitionCHROMAT_FILE: MSMg01no300_p06.b1 PHD_FILE: MSMg01no300_p06.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:38:13 2005CHROMAT_FILE: MSMg01no300_p06.g1 PHD_FILE: MSMg01no300_p06.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:38:13 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
ACTTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCCAGXXXXXXXXXX
XXXXXXXXXXXGTTTCCATAAATGATAACCGTGGTTATGAATAGATTGGA
AACAAGACTGTGAAAGAATTTCCCCCCACTTCAGAGGGTCATTTATAGCG
CACTGAAGGGAAAGGAGAATTTCAGGCCTGGAAAGCTTAGAAACAGAACG
AGTTTTTATCAGTTTCCCTGACACTGGCAGATCATAGCCTGAGTTGTGCT
CTCTAAGGTTTACAGATAATGGGGTGGCTGCTAATTCATTCGGCTGCTGG
AGCCGAGGCCTATTCAGCAGGGTAAACCAGGGAGTTTTCATAGCCCTGCT
TTGTAGTCTTTATTATATCACCAATGCACGAATCATCCTTTATATTTTAA
TGAGACATTTGAAAAGTATTTGATTCCCTCTGTCTAGGGGCTCTTTCTCA
GCTGAGATTGTACCAAAGGGCCGTCCAATGTAGCCTCATTTTCTGAAAGC
AATACTATCTGTATTCCTACCCCTCCCCTGTCACTTAAATAATTTCATTG
TGCGTCTTCGTGTTAAAGGTATTGAATTAGCTTATCCCAAAAACCTAAAC
TACCCTTCCCTTGCCTTCCCCTCACAACCCCCCTTTTGCCTGTTTTGAGA
ACGACGCCGTATAACACGGTCGTTTCACATCCCACTTTTGACTTTGCTGC
CCGTTACGATGCTTTCCGGGAATTGCTTTTACAAAC
CCGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXTCCTGTCTGGCTGGAGAGGAGAC
AGTGCATGAAAAATGGTGTTTTTAACCACAGGAGGCGAAGGTAAGTGAGA
AACACTTTCATCTATTATCCGGGGTCAACGGGCTCCCTCCCATCAGGTAA
CCTTGAGGCCCAATGAATGGCCCATTTCGGGAGGTGCGGCATTGTGTGTA
CCAGTAGCCTCTCTTCACAATCCCTACCCTGGGACAATAGTGCCTACTAC
TGTGGTGGGTGGCTTGCCTCGTCTCCCATGGGTCTGTCTCTTCCTATCAT
AGGCCTTTCACCGCTTTTGTTTTTTCCCGCCTCGCCCCCCAGGTATGTGT
TTGTCCACTAATATGACATGCGCTTCTGACTCCTTACCAAATAAACGGTC
CTGGCGTAGAGGCCGGTGTGCTTTGATACCCATCCCGATTCAGCGCGTTG
CCTCTCACCTGTTGCCCCTCCCCCTATACCCGTTTTCATTCTTTACTTCT
GTTTGACCATACACCCCCCCCTTGTCTACCACTCCAGCCCATTTTCCCGC
TGCGCAGAAGGATCCTGACCATTCGCCCTTCCCTTCTTACGTACGTTTTG
CCCTACTCACCCTTATACTCGAGCCTTTCGGCTTTCCCTGTCCTCCATGG
CCCCAGTGTATCTAGTATCCTCGCCCCCATTTGCCTTCCACCGTTTTACT
TCCCTATGAACTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no300_p06.b1 MSMg01no300_p06.b1 CHROMAT_FILE:
MSMg01no300_p06.b1 PHD_FILE: MSMg01no300_p06.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:38:13 2005
         (192 letters)



>mm_chr12_12534882_12535473
          Length = 592

 Score =  356 bits (184), Expect = e-103
 Identities = 190/192 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   tcagagggtcatttatagcgcactgaagggaaaggagaatttcaggcctggaaagcttag 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tcagagggtcatttatagcgcactgaagggaaaggagaatttcaggcctggaaagcttag 260

                                                                       
Query: 61  aaacagaacgagtttttatcagtttccctgacactggcagatcatagcctgagttgtgct 120
           |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 261 aaacagaacgagtttttatcagtttccctgacactggcagatcaaagcctgagttgtgct 320

                                                                       
Query: 121 ctctaaggtttacagataatggggtggctgctaattcattcggctgctggagccgaggcc 180
           |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ctctaagggttacagataatggggtggctgctaattcattcggctgctggagccgaggcc 380

                       
Query: 181 tattcagcaggg 192
           ||||||||||||
Sbjct: 381 tattcagcaggg 392


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 9
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 192
Length of database: 592
Length adjustment: 8
Effective length of query: 184
Effective length of database: 584
Effective search space:   107456
Effective search space used:   107456
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)