Query= MSMg01no301_n12.b1 MSMg01no301_n12.b1 CHROMAT_FILE:
MSMg01no301_n12.b1 PHD_FILE: MSMg01no301_n12.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:39:20 2005
(621 letters)
>mm_chr12_79142207_79143227
Length = 1021
Score = 1125 bits (582), Expect = 0.0
Identities = 614/630 (97%), Gaps = 9/630 (1%)
Strand = Plus / Plus
Query: 1 atataacaagagagagt---------aacaaacaaacaaacaatatcttttaacactgaa 51
||||||||||||||||| |||||||||||||||||||||||||| |||||||
Sbjct: 192 atataacaagagagagtaaaaataaaaacaaacaaacaaacaatatcttttagcactgaa 251
Query: 52 atttaactcatgacaatatttcatgcatcttctcccaggtaacttgaagaaagatttctc 111
|||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||
Sbjct: 252 atttaactcatgacaatatttcatgcatcttctcccaggtaacttggagaaaaatttctc 311
Query: 112 ccagagaaaattaaaaaaaattttttttattctagagcagtctctcttaatgtgtagatt 171
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 312 ccagagaaaattaaaaaaatttttttttattctagagcagtctctcttaatgtgtagatt 371
Query: 172 gcagccatctggaaatatgtacttccagtggtcttaggagctggaacagttataaagtag 231
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 372 gcagccatctggaaatatgtacttccaatggtcttaggagctggaacagttataaagtag 431
Query: 232 taagaaaataattttatggttgagggtcaccacagtgagaactatattaaaggattacag 291
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 432 taagaaaataattttatggttgagggtcaccacagtgagaactatattaaaggattacag 491
Query: 292 cattaagaaggttgaagaccactgccctatagcctgagatgaagtctgtgtgtgtgtctc 351
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 492 cattaagaaggttgaagaccactgccctatagcctgagatgaagtctgtgtgtgtgtctc 551
Query: 352 tgtgtctcgatgtgtgtctgggagcctatgcatctatatatctatgtgtgtgtgctggga 411
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 552 tgtgtctcgatgtgtgtctgggagcctatgcatctatatatctatgtgtgtgtgctggga 611
Query: 412 acaaacccataaccttgcacacactaggcgagcaatctaccctatgagtttgtctacaac 471
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 612 acaaacccataaccttgcacacactaggcgagcaatctaccctatgagtttgtctacaac 671
Query: 472 catgaatctaaacccttaacaccattttcagtgttggctttcattggcttccatttttct 531
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 672 catgaatctaaacccttaacaccattttcagtgttggctttcattggcttccatttttct 731
Query: 532 tccctgtgacctcagatcagttgctgctccttcatgactttactgctgactccccactca 591
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 732 tccctgtgacctcagatcagttgctgctccttcatgactttactgctgtctccccactca 791
Query: 592 agtgcacgtggaagacgtgctgtgtcccaa 621
||| ||||||||||||||||||||||||||
Sbjct: 792 agtacacgtggaagacgtgctgtgtcccaa 821
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 621
Length of database: 1021
Length adjustment: 10
Effective length of query: 611
Effective length of database: 1011
Effective search space: 617721
Effective search space used: 617721
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no301_n12.g1 MSMg01no301_n12.g1 CHROMAT_FILE:
MSMg01no301_n12.g1 PHD_FILE: MSMg01no301_n12.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:39:20 2005
(564 letters)
>mm_chr12_79298563_79299526
Length = 964
Score = 1067 bits (552), Expect = 0.0
Identities = 561/564 (99%)
Strand = Plus / Minus
Query: 1 gtgtttctgcctctatatagaagaaattgaaaattttgacatctttcaaattagttccag 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 764 gtgtttctgcctctatatagaagaaattgaaaattttgacatctttcaaattagttccag 705
Query: 61 agttattcccatcacacatatgtctgctaccttctacccctgtgagtatccaaatatgaa 120
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 704 agttattcccatcacacatctgtctgctaccttctacccctgtgagtatccaaatatgaa 645
Query: 121 ttagtgtcaagcctgactatgagaaggatactatttaaaggcagtcattaatttatgttt 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 644 ttagtgtcaagcctgactatgagaaggatactatttaaaggcagtcattaatttatgttt 585
Query: 181 gtgttactgtcctttttcctccctggatctgagtagaatgccagatctaacatgctctct 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 584 gtgttactgtcctttttcctccctggatctgagtagaatgccagatctaacatgctctct 525
Query: 241 tgctccaagagagatgtatattgctggtttacaaatagctggtgttagactacttgatga 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 524 tgctccaagagagatgtatattgctggtttacaaatagctggtgttagactacttgatga 465
Query: 301 gttttattctccccaaatctgagtttcttgagtgcttacactaagggtgtagaaagaaga 360
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 464 gttttattctccccaaatctgagtttcttgagtgcttacactaagggtatagaaagaaga 405
Query: 361 tcaactgaagtgatacttcctttgatgagaaaggaagtagaggcttggacgttgctagga 420
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 404 tcaactgaagtgatacttcctttgatgagaaaggaagcagaggcttggacgttgctagga 345
Query: 421 acaattttctagcaaagatttaaattctcatctccctaacccaaagagctcctaggctca 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 344 acaattttctagcaaagatttaaattctcatctccctaacccaaagagctcctaggctca 285
Query: 481 gaaagaaatcatcacttttctgcttaatataggaagagcaagtgtttaccctaaagtaat 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 284 gaaagaaatcatcacttttctgcttaatataggaagagcaagtgtttaccctaaagtaat 225
Query: 541 tctaccaacataaataagcaaaag 564
||||||||||||||||||||||||
Sbjct: 224 tctaccaacataaataagcaaaag 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 564
Length of database: 964
Length adjustment: 10
Effective length of query: 554
Effective length of database: 954
Effective search space: 528516
Effective search space used: 528516
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
