Query= MSMg01no301_p13.b1 MSMg01no301_p13.b1 CHROMAT_FILE:
MSMg01no301_p13.b1 PHD_FILE: MSMg01no301_p13.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:39:30 2005
(315 letters)
>mm_chr12_37890457_37891171
Length = 715
Score = 571 bits (295), Expect = e-167
Identities = 307/311 (98%)
Strand = Plus / Minus
Query: 5 gaattctgattttcaaagctatctcaacatcaatttatctatgcttgcacccaaaagaaa 64
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 515 gaattctgattttcaaaactatctcaacatcaatttatctatgcttgcacccaaaagaaa 456
Query: 65 ataatgaatgaagccaaatttgactttgtttctagggatgtgaaagacagaagcagagag 124
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 455 ataatgaatgaagccaagtttgactttgtttctagggatgtgaaagacagaagcagagag 396
Query: 125 aaattgcacaaagaaacactacaggcttattcctaaattgatacaaatttagtaagtgaa 184
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 395 aaattacacaaagaaacactacaggcttattcctaaattgatacaaatttagtaagtgaa 336
Query: 185 ttagattagaaaacaattcacaatttgcatttaaaaaatatctacctaagtcctcacaca 244
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 335 ttagattagaaaacaattcacaatttgcatttaaaaaatgtctacctaagtcctcacaca 276
Query: 245 ttagatatggcttctttcctggagcaggcaacgactttgccttggcacctcactgcagtc 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 275 ttagatatggcttctttcctggagcaggcaacgactttgccttggcacctcactgcagtc 216
Query: 305 cacaagtaaac 315
|||||||||||
Sbjct: 215 cacaagtaaac 205
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 315
Length of database: 715
Length adjustment: 9
Effective length of query: 306
Effective length of database: 706
Effective search space: 216036
Effective search space used: 216036
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no301_p13.g1 MSMg01no301_p13.g1 CHROMAT_FILE:
MSMg01no301_p13.g1 PHD_FILE: MSMg01no301_p13.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:39:30 2005
(619 letters)
>mm_chr12_37714904_37715922
Length = 1019
Score = 1116 bits (577), Expect = 0.0
Identities = 607/619 (98%), Gaps = 4/619 (0%)
Strand = Plus / Plus
Query: 1 attctctttgaacatcaatattgagtcacaaacaactacttgtaactccagttcatggca 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 attctctttgaacatcaatattgagtcacaaacaactacttgtaactccagttcatggca 264
Query: 61 tctgatgtcatcttcttacatccaaatttccctgcacatatacacactcaccctcacaca 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 tctgatgtcatcttcttacatccaaatttccctgcacatatacacactcaccctcacaca 324
Query: 121 cagacctcacacacacacacacacacacacacacacacacaccatgtacacagacccatg 180
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 cagacct----cacacacacacacacacacacacacacacaccatgtacacagacccatg 380
Query: 181 cacacacacatacaaacacacacacgcacaatacacacttatacataagtaaaaataaaa 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 cacacacacatacaaacacacacacgcacaatacacacttatacataagtaaaaataaaa 440
Query: 241 cctatacatattttttaacaaaaattttaaaacatgtaaaaagaaaatatagatgagtca 300
|||||||||| | |||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 441 cctatacatacatgaaaacaaaaattttaaaacatgtaaagagaaaatatagatgagtca 500
Query: 301 ataccatgtcaaaagataaagaattttataaactataaatgtgaactttaaaaattcaca 360
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 501 ataccatgtcaaaagataaagaattttataaactataaaggtgaactttaaaaattcaca 560
Query: 361 tgagtcctactaaattatagaaaaacacctttagaaaaaaaattagagctcaacaaagaa 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 tgagtcctactaaattatagaaaaacacctttagaaaaaaaattagagctcaacaaagaa 620
Query: 421 ttttcaactgaggaatatcaaatggctgagaaacacccaaagaaatgttcaacatcctta 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 ttttcaactgaggaatatcaaatggctgagaaacacccaaagaaatgttcaacatcctta 680
Query: 481 ttcatcagggaaattcaaattaaaacaacccggagattccacctcacaccaggcagaatg 540
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 681 ttcatcagggaaattcaaattaaaacaaccctgagattccacctcacaccaggcagaatg 740
Query: 541 gctaagatcaaaaacataggtgacagcagatgctggccaggatgttgagacagaggaata 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 gctaagatcaaaaacataggtgacagcagatgctggccaggatgttgagacagaggaata 800
Query: 601 ctcctccattgctagtgag 619
|||||||||||||||||||
Sbjct: 801 ctcctccattgctagtgag 819
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 47
Number of extensions: 6
Number of successful extensions: 6
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 619
Length of database: 1019
Length adjustment: 10
Effective length of query: 609
Effective length of database: 1009
Effective search space: 614481
Effective search space used: 614481
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
