Query= MSMg01no302_d16.b1 MSMg01no302_d16.b1 CHROMAT_FILE:
MSMg01no302_d16.b1 PHD_FILE: MSMg01no302_d16.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:39:49 2005
(688 letters)
>mm_chr12_40147432_40148519
Length = 1088
Score = 1301 bits (673), Expect = 0.0
Identities = 682/685 (99%), Gaps = 1/685 (0%)
Strand = Plus / Minus
Query: 5 gaattctgcagtctctgtgcatattgtctcagtctttgggagttcatatgtcctttagtc 64
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 868 gaattctgcaggctctgtgcatattgtctcagtctttgggagttcatatgtcctttagtc 809
Query: 65 ttgttgatttagacggtcttgtttacttggtgtcccccc-cccatatggcttttacactc 123
||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||
Sbjct: 808 ttgttgatttagacggtcttgtttacttggtgtccccccaccaatatggcttttacactc 749
Query: 124 tttctgccacctcttttgcagagtttcctgcccttcttaaaattttaaaccaattatgca 183
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 748 tttctgccacctcttttgcagagtttcctgcccttcttaaaattttaaaccaattatgca 689
Query: 184 tatacccttcaatcaaggatacagtaacactaacattccctattatcttgtagaaactga 243
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 688 tatacccttcaatcaaggatacagtaacactaacattccctattatcttgtagaaactga 629
Query: 244 tagaaaaatgaactggtattacttaggtcacaatgaaaactggaagactgtcaaaagcat 303
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 628 tagaaaaatgaactggtattacttaggtcacaatgaaaactggaagactgtcaaaagcat 569
Query: 304 gtgttcttaccaccttctccacattatagtatggctttataaatctacatgtctcccaaa 363
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 568 gtgttcttaccaccttctccacattatagtatggctttataaatctacatgtctcccaaa 509
Query: 364 cacaacacctgaaatttgaatgcatcatctgttctagctatttggccatatctcaaaatc 423
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 508 cacaacacctgaaatttgaatgcatcatctgttctagctatttggccatatctcaaaatc 449
Query: 424 cttgcaaaaactctccaatttagtgctggtttttaaaaaaggttaaaaaatgaagttgat 483
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 448 cttgcaaaaactctccaatttagtgctggtttttaaaaaaggttaaaaaatgaagttgat 389
Query: 484 tccatttgaaagatacagtatttaatgagacagaaaaatgaaagtagactcacatttgac 543
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 388 tccatttgaaagatacagtatttaatgagacagaaaaatgaaagtagactcacatttgac 329
Query: 544 accttgcacaaagctcaagtccaattggattaaggacctcaacataaaaccagatatcct 603
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 328 accttgcacaaagctcaagtccaattggattaaggacctcaacataaaaccagatatcct 269
Query: 604 gaatctaatagaagagaaagcagaaagagcctggaactcattggcatagagggaaatttc 663
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 268 gaatctaatagaagagaaagcagaaagagcctggaactcattggcatagagggaaatttc 209
Query: 664 ctaaacagaactccaatggcttatg 688
|||||||||||||||||||||||||
Sbjct: 208 ctaaacagaactccaatggcttatg 184
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 34
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 688
Length of database: 1088
Length adjustment: 10
Effective length of query: 678
Effective length of database: 1078
Effective search space: 730884
Effective search space used: 730884
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no302_d16.g1 MSMg01no302_d16.g1 CHROMAT_FILE:
MSMg01no302_d16.g1 PHD_FILE: MSMg01no302_d16.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:39:49 2005
(280 letters)
>mm_chr12_39949878_39950558
Length = 681
Score = 427 bits (221), Expect = e-124
Identities = 266/281 (94%), Gaps = 3/281 (1%)
Strand = Plus / Plus
Query: 1 aatatacttatttgaaataaacaggcaattttgacttgtcctgtcccaaatggattaact 60
||||||||| ||||||||||||||||||||| |||||||||||| ||||||||| ||||
Sbjct: 201 aatatacttctttgaaataaacaggcaatttcgacttgtcctgtgacaaatggatcaact 260
Query: 61 tctacgtcctggaaagatgatattaag-aagaacacagataacccagaacttcttaatta 119
|||| |||||||||||||||||||||| ||| |||||||||||||||||||||| |||||
Sbjct: 261 tctaagtcctggaaagatgatattaagaaag-acacagataacccagaacttctaaatta 319
Query: 120 cttggaaaatttgtattcaggaaaacgtttgtaaaatctatgttact-caggattctgtt 178
| |||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||
Sbjct: 320 cctggaaaatttgtattcaggaaaacttttgtaaaatctatgttactccaggattctgtt 379
Query: 179 ggctgcttttgaatactggccattaaagctggggacagtcctgaagcggggtccttttca 238
||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 380 ggctgcttttggatactggccattaaagctggggacagtcctgcagcggggtccttttca 439
Query: 239 cccttttgaacaccattgggtcatgcacagtgttttccaaa 279
||| |||||||||||||||||||||||||||||||||||||
Sbjct: 440 cccctttgaacaccattgggtcatgcacagtgttttccaaa 480
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 8
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 280
Length of database: 681
Length adjustment: 9
Effective length of query: 271
Effective length of database: 672
Effective search space: 182112
Effective search space used: 182112
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
