BAC Information

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BAC

Clone NameMSMg01-302I06
Chromosome12 (Build37)
Map Location 114,968,670 - 114,969,206
singlet/doubletsinglet
Overlap geneIgh
Upstream geneAW555464, LOC382640, Pld4, AI450948, LOC100041194, BC022687, Cdca4, Gpr132, Jag2, Nudt14, Brf1, Btbd6, Pacs2, Tex22, Mta1, Crip2, Crip1, 4930427A07Rik, LOC676349, Tmem121, Igh-2, Gm900, Igh-1b, Igh-3, Ighg1, AI324046, LOC668370, LOC668375, EG382645, Igh-5, Igh-6, Ighj4, Ighj3, Ighj2, Ighj1, Ighd4-1, Ighd3-2, Ighd5-6, Ighd2-8, Ighd5-5, Ighd2-7, Ighd5-8, Ighd5-4, Ighd2-6, Ighd5-7, Ighd5-3, Ighd2-5, Ighd5-2, Ighd2-4, Ighd6-2, Ighd2-3, Ighd6-1, Ighd1-1, 4930523C11Rik, Ighd3-1, Ighd5-1, Adam6, Ighv5-1, Ighv2-1, Ighv5-2, Ighv2-2, Ighv5-3, Ighv5-4, Ighv6-1, Ighv2-3, Ighv5-5, Ighv5-6, Ankrd12-like, Ighv5-7, EG668389, Ighv5-8, Ighv5-9, Ighv5-10, Ighv2-5, Ighv5-11, Ighv5-12, Ighv2-6
Downstream geneIghv5-9-1, EG628098, Ighv2-9-1, Ighv5-13, Ighv2-6-8, EG629785, Ighv2-7, LOC668405, Ighv5-15, Ighv5-16, Ighv5-17, Ighv5-18, Ighv2-8, Ighv2-9, Ighv5-19, Ighv7-1, Ighv7-2, Ighv14-1, Ighv4-1, Ighv3-1, Ighv11-1, Ighv14-2, Ighv4-2, Ighv3-2, Ighv11-2, Ighv14-3, EG629812, Ighv6-2, Ighv9-1, Ighv12-1, EG629818, Ighv12-2, Ighv9-3, Ighv7-3, Ighv15-1, Ighv14-4, EG668438, Ighv7-4, EG629833, EG633457, Ighv13-1, Ighv3-6, EG636260, Ighv3-7, Ighv5-21, Ighv3-8, Ighv8-1, Ighv1-1, Ighv13-2, EG435321, Ighv6-3, EG628398, EG639510, Ighv6-6, EG432701, EG629849, Ighv1-2, Ighv10-1, Ighv1-3, Ighv1-4, Ighv10-2, EG668469, EG380809, Ighv1-6, EG668474, Ighv10-4, Ighv1-8, Ighv15-2, Ighv1-9, Ighv1-10, Ighv1-11, EG629860, Ighv1-13, Ighv1-14, Ighv1-15, EG629866, Ighv1-17-1, Ighv1-17, Ighv1-18, EG668493, Ighv1-19, EG668497
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-302I06.T7 (MSMg01no302_i06.b1)MSMg01-302I06.TJ (MSMg01no302_i06.g1)
ACCAG428383AG428384
length732737
length of high quality
(start - end)		666 (44 - 709)544 (74 - 617)
definitionCHROMAT_FILE: MSMg01no302_i06.b1 PHD_FILE: MSMg01no302_i06.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:40:10 2005CHROMAT_FILE: MSMg01no302_i06.g1 PHD_FILE: MSMg01no302_i06.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:40:10 2005
singlet/doublet---singlet
BLAST hitno hit dataplural
sequence
CATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAA
TTCTTCATGTCATTTGGATATTGGCCTTCCATGGGACTTAGGGATAGTGA
AGAACTTTTTCTAATCTGTAGGCTGCCATTTTGTCTTATTGACTATGTCC
TTTGCCTTACAGATTTTTTTCAGTTTCATGAGATCCTGTCTACCAATTTA
TGATCCTAGAGCCTGAACCATTGTGGTTCTCTTCAGGGAATTGTCTCCTG
TATCAATGAGTTCAAAACTATTCTCCACTTTTTGTTCATTTAGATTTAGT
TAATCCAGTATAGGTTGAAGTCTGCCATTCACTTTGATTTGAAGTTCGTG
CAGGATGATAGATATGAATCTATTTGCATCTAGATCAGCACCATTTGTTG
GGGGATGCATTCTTTTTATTATGAGTTTTATTATGATTATTGGGTTCTTT
ATCAAAAATCAAATGTCCATAAATGTGTGGTATTTTTTCAGAGCATTCGA
TTCAATTCCATTGATCATTGTATGTGTTTCTATACAAATACCATGCAGTT
TTTATTACTATTACTGTACAGTACAGCTTGAGGTCAGGGATGGTGATTTC
TCCTGAAGTTGTTTCATTATTCAGGATTGTTTTAGCTTTATGAATTTGAG
ATTTGCTTTTTCAAGGTACGTAATAAATTGGGTTGGAAATTTAATGGGAA
TTGCACTGAATGTGTAGATTGATTTATTAAGA

TGACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXCAAGGAGATTCATGCCTTGTGAATCCA
TCCCAATCTGATCTCAATCTTCAAACATGTTTGTGCATAATTTACATCTT
AATCAGTTGCTGGAAATTAAAAGGACATAAGCTAAACTTTAAAACTCTTT
CTATTTAATGTGTCAGAATAGAATATGTGGACTGAAGTTTACATGTGCAT
AGGATATCATTGTTACAATGATGGTTCAGATATGCACCAGTAGCACAGGT
GATGCTTAACTGGAAAAAACTGTGACCAGAGCCCAGATGTTGATGTTGGC
TGAAAGAACCTAGTGTCCCATATTTGAGCTAGAGAAGTGTTATTCAGAGA
AGCAGTGCTGGATTTGGGATCCATCTTAATGGATCAGCAACATGAGGAAG
ATTTGGAAGCCAGATTGATGAGATTACTATAATCCTGGTTCTGAACACAC
AACACACAATAGTAAGTTGAACTTCTCCATGCAATGCTAAAGATAAAGCA
TCCAGTATCATGTTACACAGGACCAAGCTGAGGATCAGTCTGTGGGTGAA
ATACAATGAACAGAAAGTCGGTTGGAATATATATATATATATATATATAT
ATATATATATATATATATATATATATATATATATATATATATATATATAT
CTACCTTTCTATTTTTCATCACCTAGACACACTCAAN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no302_i06.g1 MSMg01no302_i06.g1 CHROMAT_FILE:
MSMg01no302_i06.g1 PHD_FILE: MSMg01no302_i06.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:40:10 2005
         (544 letters)



>mm_chr12_114968406_114969348
          Length = 943

 Score =  717 bits (371), Expect = 0.0
 Identities = 497/541 (91%), Gaps = 13/541 (2%)
 Strand = Plus / Minus

                                                                       
Query: 7   gattcatgccttgtgaatccatcccaatctgatctcaatcttcaaacatgtt--tg--tg 62
           |||||||| ||||||||||||||||||||||||||||||||||||||||| |  ||  | 
Sbjct: 801 gattcatggcttgtgaatccatcccaatctgatctcaatcttcaaacatgatcatgatta 742

                                                                       
Query: 63  ca--taatttacatcttaatcagttgctggaaattaaaaggacataagctaaactttaaa 120
           ||  |||||||||||| || || ||||||| |||||||| ||||||||||||||||||||
Sbjct: 741 caagtaatttacatctaaagcatttgctgggaattaaaaagacataagctaaactttaaa 682

                                                                       
Query: 121 actctttctatttaatgtgtcagaatagaatatgtggactgaagtttacatgtgcatagg 180
           ||||||||||||||||| ||||||||||||||||||||| ||||| || |||||||||| 
Sbjct: 681 actctttctatttaatgggtcagaatagaatatgtggacggaagtctaaatgtgcataga 622

                                                                       
Query: 181 atatcattgttacaatgatggttcagatatgcaccagtagcacaggtgatgcttaac-tg 239
           ||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||| | 
Sbjct: 621 atatcattgttacaatgatggttcaaatacgcaccagtagcacaggtgatgcttaacat- 563

                                                                       
Query: 240 gaaaaaa-ctgtgaccagagcccagatgttgatgttggctgaaagaacctagtgtcccat 298
           ||||||| || ||||||||||||||||||||||||||||| ||||| ||||||||| || 
Sbjct: 562 gaaaaaacctatgaccagagcccagatgttgatgttggct-aaagagcctagtgtctcac 504

                                                                       
Query: 299 atttgagctag-agaagtgttattcagagaagcagtgctggatttgggatccatcttaat 357
           |||||| | || | |||||||||||||| ||||||||| || ||||||||||||||||||
Sbjct: 503 atttgatcaagca-aagtgttattcaga-aagcagtgccgggtttgggatccatcttaat 446

                                                                       
Query: 358 ggatcagcaacatgaggaagatttggaagccagattgatgagattactataatcctggtt 417
           | ||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
Sbjct: 445 gaatcagcaacatgaggaagatttggaagccagattgatgagattactagaatcctggat 386

                                                                       
Query: 418 ctgaacacacaacacacaatagtaagttgaacttctccatgcaatgctaaagataaagca 477
           ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 385 ctgaacacacaacacacaatagtaagttgaacttctccacgcaatgctaaagataaagca 326

                                                                       
Query: 478 tccagtatcatgttacacaggaccaagctgaggatcagtctgtgggtgaaatacaatgaa 537
           ||||||||||||||| |||||||| ||| ||||||||| |||||||||||||||||||||
Sbjct: 325 tccagtatcatgttatacaggacccagcagaggatcagcctgtgggtgaaatacaatgaa 266

            
Query: 538 c 538
           |
Sbjct: 265 c 265


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 544
Length of database: 943
Length adjustment: 10
Effective length of query: 534
Effective length of database: 933
Effective search space:   498222
Effective search space used:   498222
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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