CAATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCAGGAATTATTAAAGATCTCCATTTGCCCATGACCACCAGAACTCC
ATTATCCCAACTCTCCTCTCCTTTATTGCTTTGTAATTTCTGTTCATCTC
CCATTCACCTTCATTTTGGCTGTTACTTCTAATGCCAAGTCATTTGATCA
ATCATTATCCTTGATCTTACTTTGCTGGCTCTCAATTCCATTGTCTGGAC
TGATTTATTACCTTCCTGGCTTTAGAATGGCCAGGCTCAGTCCTTCAAAC
ACTGCCTCTACAATTTCTAAAGTAATATGCCCAAATCACTTGATGTTCTT
CCCTTGACTTGAATTGTTTCTATAGCCACCCCCCTCTAAATCCATATGGC
AGCATATTCAACCTCAGCTCTAAGCATATTTTATATTACCTTATTTTTGT
TCTGTGAATTGCCTAGTGAAATTAGACTGGGTATTAGGATGCAATCCTCT
ACAACTTCCTGCAGTTGTGACAAATAAAACATTTTCACCAGGGTAAGCCA
ATCATCCCTATGAAGGCATAAGAGGGTGAGAATAGGAAGGCATATTGATT
TTATAAATTCAATGTTGCTGAGAAGTCACAGTATTTCTGAAGTTTGTACA
TAGTGTAAGAAACAAGATACGCAAGACATTCTTACTAAATGTACAGTATA
GTATTGAGATGAACCTAAGTAACGTGAACACAGAACAAA

ATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXAGTGTCACAGTACTTCAATATCTAAT
TTTAACCTTTTAGTTATTTAATGTAATACTAATATGCAGTTTGTAGCAGA
TAACTATTATATAAAAATATATTCAATTGTGAGATCAGCAACATCATTAT
ATAATTCTGAAATATTTTATTTATTCAAAAATATAACTTTTGTAAAGGAG
GATTCTTGTGTAGGTATAAAATAACATTTGTATGTTAAATGATGTAACCA
GACAAAATTTAGTCTTTGTTCAAAAGAAAATATAGACAACACACTATAGA
ATATTAATACAAATGTTTTTTGACACCCACCCCCTCGCCTTGGTTATAGG
GATGTGTGGAAGGTATATGTAACATTCTACCTCAATGAATAAGAATAATG
TTACATTTCTTCAAAGCTTTTTATTTTTTTATTGACAGAATAGCTTGTAG
TACAGACTTATCTAGCATCTAGAGCCTATTTTATATTTACAGAATCATGT
GTTTTCTTACAGTTTATTAATACCTTTTTGCATCCTTTTATATATGTTTA
ATCTCAGAGTAATAACATTATTGTGAAACAATTACTCTAGCCTATATGAT
AAATTTATTTCCACCAAAGGTCAAAATAAATGATGGATATGAAAATATCT
GAATTTGTGTCTGCAGCACCCCTGCAGATGAGCCAATA

Query= MSMg01no302_k18.b1 MSMg01no302_k18.b1 CHROMAT_FILE:
MSMg01no302_k18.b1 PHD_FILE: MSMg01no302_k18.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:40:22 2005
         (320 letters)



>mm_chr12_38119986_38120705
          Length = 720

 Score =  600 bits (310), Expect = e-176
 Identities = 313/314 (99%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcaggaattattaaagatctccatttgcccatgaccaccagaactccattatccca 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcaggaattattaaagatctccatttgcccatgaccaccagaactccattatccca 264

                                                                       
Query: 65  actctcctctcctttattgctttgtaatttctgttcatctcccattcaccttcattttgg 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 actctcctctcctttattgctttgtaatttctgttcatctcccattcaccttcattttgg 324

                                                                       
Query: 125 ctgttacttctaatgccaagtcatttgatcaatcattatccttgatcttactttgctggc 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 ctgttacttctaatgccaagtcatttgatcaatcattatccttgatcttactttgctggc 384

                                                                       
Query: 185 tctcaattccattgtctggactgatttattaccttcctggctttagaatggccaggctca 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 tctcaattccattgtctggactgatttattaccttcctggctttagaatggccaggctca 444

                                                                       
Query: 245 gtccttcaaacactgcctctacaatttctaaagtaatatgcccaaatcacttgatgttct 304
           |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 445 gtccttcaaacactgcctctacaatttctaaagtaaaatgcccaaatcacttgatgttct 504

                         
Query: 305 tcccttgacttgaa 318
           ||||||||||||||
Sbjct: 505 tcccttgacttgaa 518


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 320
Length of database: 720
Length adjustment: 9
Effective length of query: 311
Effective length of database: 711
Effective search space:   221121
Effective search space used:   221121
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no302_k18.g1 MSMg01no302_k18.g1 CHROMAT_FILE:
MSMg01no302_k18.g1 PHD_FILE: MSMg01no302_k18.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:40:22 2005
         (292 letters)



>mm_chr12_38276964_38277655
          Length = 692

 Score =  549 bits (284), Expect = e-161
 Identities = 290/292 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   agtgtcacagtacttcaatatctaattttaaccttttagttatttaatgtaatactaata 60
           ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 492 agtgtcacagtacttcaatatctaattttaaccttttagctatttaatgtaatactaata 433

                                                                       
Query: 61  tgcagtttgtagcagataactattatataaaaatatattcaattgtgagatcagcaacat 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 432 tgcagtttgtagcagataactattatataaaaatatattcaattgtgagatcagcaacat 373

                                                                       
Query: 121 cattatataattctgaaatattttatttattcaaaaatataacttttgtaaaggaggatt 180
           ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 372 cattatataattctgaaatattttatttattcaaaaatataacttttataaaggaggatt 313

                                                                       
Query: 181 cttgtgtaggtataaaataacatttgtatgttaaatgatgtaaccagacaaaatttagtc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 312 cttgtgtaggtataaaataacatttgtatgttaaatgatgtaaccagacaaaatttagtc 253

                                                               
Query: 241 tttgttcaaaagaaaatatagacaacacactatagaatattaatacaaatgt 292
           ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 252 tttgttcaaaagaaaatatagacaacacactatagaatattaatacaaatgt 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 292
Length of database: 692
Length adjustment: 9
Effective length of query: 283
Effective length of database: 683
Effective search space:   193289
Effective search space used:   193289
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)