ATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAAT
TCCACAAATGCTTTAGCTCTCTGGATCCTTCTTGTATCCGTGGATGTGTT
GCATAGATGTACGTTTCCTCCATTCCAATGTTTGTCTTCTTTCATTACAT
CTGCTCCCCAATGAAGTTTATTTCAAATAAATTCTTAGAAGTACAGAATC
CCAAGCAGTGTAGTCTGTGTTCTGATCTCTGGCGCTATTTATATACACAG
CACTGGTCCATTAAAAATAATTATATTCTCTTTGTTATAATGTATCTTGT
TAGCTTGCTATTCTTGACTCTCTAAGAAGTCTTATTTTGTTGAAGCTATG
CGGTTACTTTATATGGCAAGAGTGTTTTAAGCCTCTCTGTATTCTCACCC
TTCCCAGAAGAGCCCTTAAGATGTGATTGTTATGTAAATTGACTCTTGCT
TAGAATGTGCACTGGATAAAGGCACAGACTCTTCCTTACTACAGTGGCAC
AGAGAGATGCTAAACATGGTGACAGAAAATTCACCATCAGCCTCTTGCTC
TGAATAAAGTGGATAGGAAGTGCTGTTGGACTAAAGGGGGGTTGAGTTTG
TGAGGGTGAAATAATCAGTGATGTCAGGGTGATTATTTTTCTTTATGAAC
AATGGTTAATACTAGAATTTGGGTTCACTATGATGCAGACATGAAGTCTA
TGGCAGGGATGACACTGGAGTTGCTTTTGAA

TGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXACATTCTGACAGTTTAAAAAAGGTTTTA
TTTCAGTATTTCTGATCTTTCCCACCTGAGGTGGAAATTTGTAATACATA
TTTTAATTTTTACTATGCAATTAGTATGCATTTGATATTCTACTGATAAG
AATACTAGGTAATTGTAACTGAATGCATTTTTTGATTATCTGTGTATTGA
AGAAATGTCTTCTTCATGAATATAGAAAATGAAGAGTGTAAAAACCAGTT
GTATGCTGAAACCCTGATACAGTCACTGTTAGCATAGTGATAGTTTCTCT
TTGTAGCACATGTTTTTAATTGCACCTCCCCCACCAACAGAAGTGAATAT
ATTTAAAAAAAACATTAAAAGGAAAATTCACCAAGCACAGCACTATCGCA
GTAAAAATTAAAACTATGGAACAGAAAGTGTTCGCAATAAATGTCAGTTT
TCACAGGGGTGTAGGAAGAAATATTTGGAGCCATAAGCAATGGGAAATGC
CAGCATGGAGATATTGTTTAAAATTAGTTCTTTTAAGGATTATCACTGTG
TGAATGTGCATATGCAAGCATGCATACCTCTGTGTATGTGTGTGCAGGTG
TGTGTGTCTGTGTGTGTGTGTCTGTGTGTGAAAGAGTGTGGCTACTTGTG
TGGAAGCCAGAAGACAACTTTTGCGGCAGCAGGCAA

Query= MSMg01no302_m02.b1 MSMg01no302_m02.b1 CHROMAT_FILE:
MSMg01no302_m02.b1 PHD_FILE: MSMg01no302_m02.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:40:28 2005
         (593 letters)



>mm_chr12_40393876_40394868
          Length = 993

 Score = 1054 bits (545), Expect = 0.0
 Identities = 578/589 (98%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattccacaaatgctttagctctctggatccttcttgtatccgtggatgtgttgcatag 64
           ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattccgcaaatgctttagctctctggatccttcttgtatccgtggatgtgttgcatag 264

                                                                       
Query: 65  atgtacgtttcctccattccaatgtttgtcttctttcattacatctgctccccaatgaag 124
           |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 atgtacgttttctccattccaatgtttgtcttctttcattacatctgctccccaatgaag 324

                                                                       
Query: 125 tttatttcaaataaattcttagaagtacagaatcccaagcagtgtagtctgtgttctgat 184
           ||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||
Sbjct: 325 tttatttcaaataaattcttagaagtacaaaatcccaaacagtgtagtctgtgttctgat 384

                                                                       
Query: 185 ctctggcgctatttatatacacagcactggtccattaaaaataattatattctctttgtt 244
           ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 ctctgacgctatttatatacacagcactggtccattaaaaataattatattctctttgtt 444

                                                                       
Query: 245 ataatgtatcttgttagcttgctattcttgactctctaagaagtcttattttgttgaagc 304
           ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 445 ataatgtatcttgttaggttgctattcttgactctctaagaagtcttattttgttgaaga 504

                                                                       
Query: 305 tatgcggttactttatatggcaagagtgttttaagcctctctgtattctcacccttccca 364
           ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 505 tatgcggttactttatatggcgagagtgttttaagcctctctgtattctcacccttccca 564

                                                                       
Query: 365 gaagagcccttaagatgtgattgttatgtaaattgactcttgcttagaatgtgcactgga 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 gaagagcccttaagatgtgattgttatgtaaattgactcttgcttagaatgtgcactgga 624

                                                                       
Query: 425 taaaggcacagactcttccttactacagtggcacagagagatgctaaacatggtgacaga 484
           ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 taaaggcacagacccttccttactacagtggcacagagagatgctaaacatggtgacaga 684

                                                                       
Query: 485 aaattcaccatcagcctcttgctctgaataaagtggataggaagtgctgttggactaaag 544
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 aaattcaccatcagcctcttgctctgaataaagtggataggaagtgctgttggactaaag 744

                                                            
Query: 545 gggggttgagtttgtgagggtgaaataatcagtgatgtcagggtgatta 593
           ||||||||| |||||||||||||||||||||||||||||||| ||||||
Sbjct: 745 gggggttgattttgtgagggtgaaataatcagtgatgtcaggatgatta 793


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 593
Length of database: 993
Length adjustment: 10
Effective length of query: 583
Effective length of database: 983
Effective search space:   573089
Effective search space used:   573089
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no302_m02.g1 MSMg01no302_m02.g1 CHROMAT_FILE:
MSMg01no302_m02.g1 PHD_FILE: MSMg01no302_m02.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:40:28 2005
         (291 letters)



>mm_chr12_40489576_40490266
          Length = 691

 Score =  518 bits (268), Expect = e-151
 Identities = 283/288 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   acattctgacagtttaaaaaaggttttatttcagtatttctgatctttcccacctgaggt 60
           |||||| ||||||||||||||||||||||||||||||||||||||||||| ||||| |||
Sbjct: 488 acattcagacagtttaaaaaaggttttatttcagtatttctgatctttccaacctgcggt 429

                                                                       
Query: 61  ggaaatttgtaatacatattttaatttttactatgcaattagtatgcatttgatattcta 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 428 ggaaatttgtaatacatattttaatttttactatgcaattagtatgcatttgatatttta 369

                                                                       
Query: 121 ctgataagaatactaggtaattgtaactgaatgcattttttgattatctgtgtattgaag 180
           ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 368 ctgataagaatactaggtaattgtacctgaatgcattttttgattatctgtgtattgaag 309

                                                                       
Query: 181 aaatgtcttcttcatgaatatagaaaatgaagagtgtaaaaaccagttgtatgctgaaac 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 308 aaatgtcttcttcatgaatatagaaaatgaagagtgtaaaaaccagttgtatgctgaaac 249

                                                           
Query: 241 cctgatacagtcactgttagcatagtgatagtttctctttgtagcaca 288
           ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 248 cctgatacagtcactgttagcatagtgatagtttctctttgtagcaca 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 291
Length of database: 691
Length adjustment: 9
Effective length of query: 282
Effective length of database: 682
Effective search space:   192324
Effective search space used:   192324
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)