BAC Information

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BAC

Clone NameMSMg01-302M18
Chromosome12 (Build37)
Map Location 33,701,669 - 33,701,956
singlet/doubletsinglet
Overlap genenone
Upstream genePrkar2b, Pik3cg, 2010109K11Rik, LOC100043548, Pbef1, LOC100043553, 4933406C10Rik, Sypl, LOC100043109
Downstream gene1110049B09Rik, Atxn7l4, Atxn7l1, 4930504H06Rik, Twistnb, LOC668801, LOC668806, Ferd3l, Twist1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-302M18.T7 (MSMg01no302_m18.b1)MSMg01-302M18.TJ (MSMg01no302_m18.g1)
ACCAG428586AG428587
length734736
length of high quality
(start - end)
270 (436 - 705)287 (74 - 360)
definitionCHROMAT_FILE: MSMg01no302_m18.b1 PHD_FILE: MSMg01no302_m18.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:40:31 2005CHROMAT_FILE: MSMg01no302_m18.g1 PHD_FILE: MSMg01no302_m18.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:40:31 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAA
TTCCTTGCATTCTTACAGGCTAGTGGGAGGATTCCCATCCAAAGATGCTT
GGCCAGAAACCAGCAGGTCCATCTTCACTAAGCTGTATGGGAGCTACATC
CCTGTCTCTCCACACAGAGAGACCAAGCACGGTGGCAAAAGACCCACCGA
TACGCCATGGCAGACCCTGCTCAGTGGCTCTAGAAACAAGAGATTTGTAT
CTCATGACTCCAGCTGTAATCTCAACAGAGCAGTAAACACGTTAGTGAGA
GAGGATCACAGAGCTGTTCCGTGTAGGGTCCCTAGACATCTTCCAGTCCA
AGACCTCCCAAGTTTTTTTCTCACCAGCTCCGTGATACCTCAGAAAGAAT
CTCAGTGGTCACTTGGGAGCTGCGGAATCCAGATCTTTCAGTATAGTGCC
TCCTCCTGTGTCCCAAGGCTTTTTTGTTTGAATCAAGAATGAGGTACATA
TGAACAAACCTGACTCCCGCCTGAAATCCCAGCACTTGGGAGGCTGAGAA
AGGACTACTGAGCATCTATCTAAAGGCTACACAGTGAGTTCAAGGCTAGC
TTGAGTGACAGAGTAAGACTTATCTCAGCCCTCTATCCCCTCACCTCAAA
GAATGAGGCGCCAGCCCAGAGAGGGAGCAAGTGTAGACTGTACACTGTCA
CACAGCTCATTAGTGACTGAGCTCAAGTGTACCT
TGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXACTGAACAGCAGCTTCAGCAGATACTC
CTGTTGGCCAAACAGACAGCTCTGCAAAACTAGATCTTTCTCATGCCACC
CAAGCTTTAAATACAGCCAGTCCCCAGCCATCTCATTTCTTTTCAGGGCA
TCTCATCCAGACACAGGAGATACATAGCCTTAAGATGTGTGGACCACACT
ACTCACATGCAATAAGTGAGCTCAGCCATGGGGTGACAGCAGCTACAATA
TGCAAATGAGGGAGTGTGGCTGTGATTCCGTATGAGGAGACAGAGAATGT
ATGTTTGGTCTCTACTTCTTTCCNTGCAAACCCATTCCTCTTCAGATGGT
TTTCATTTAAAATCATTCTTAGTTCAAAAAAAACAAAACAAAACGGGGGG
GAGGAGCAAACTGGTCTTGGCTTTAAGTCAATTCTAAAGCAGAGGGTGGA
TCTTCTTAAATGTAGATTGGAGCAGATGAACTTAGGAAAGGCTTGACTCT
GGAGGTGTGAACCCAGGCTCTTTGAATGCAGCCAAAGCTATCGGCTTTCT
AAAGTGCAGCACTTACCAACAGAAATAGACCTCAGGGGTGTGTGTGTGTG
TGTGTAATTTCCCAAGGAAGAACACTGTGCATGTGGATTCAGACACGGAG
AGAGCTCTCACACTTTGAAGCTAGAAGAGTCGAAAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no302_m18.g1 MSMg01no302_m18.g1 CHROMAT_FILE:
MSMg01no302_m18.g1 PHD_FILE: MSMg01no302_m18.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:40:31 2005
         (287 letters)



>mm_chr12_33701469_33702156
          Length = 688

 Score =  495 bits (256), Expect = e-144
 Identities = 280/288 (97%), Gaps = 1/288 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   actgaacagcagcttcagcagatactcctgttggccaaacagacagctctgcaaaactag 60
           |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 actgaatagcagcttcagcagatactcctgttggccaaacagacagctctgcaaaactag 260

                                                                       
Query: 61  atctttctcatgccacccaagctttaaatacagccagtccccagccatctca-tttcttt 119
           |||||||||||||||||||||||||||||||||||||||||||||||||| | ||| |||
Sbjct: 261 atctttctcatgccacccaagctttaaatacagccagtccccagccatcttatttttttt 320

                                                                       
Query: 120 tcagggcatctcatccagacacaggagatacatagccttaagatgtgtggaccacactac 179
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tcagggcatctcatccagacacaggagatacatagccttaagatgtgtggaccacactac 380

                                                                       
Query: 180 tcacatgcaataagtgagctcagccatggggtgacagcagctacaatatgcaaatgaggg 239
           ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| 
Sbjct: 381 tcacatgcaataagtgagctcagccgtggggtgacagcagctacaatatgcaaatgagga 440

                                                           
Query: 240 agtgtggctgtgattccgtatgaggagacagagaatgtatgtttggtc 287
           ||||||||||||| ||| ||||||||||||||||||||||||||||||
Sbjct: 441 agtgtggctgtgagtccctatgaggagacagagaatgtatgtttggtc 488


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 287
Length of database: 688
Length adjustment: 9
Effective length of query: 278
Effective length of database: 679
Effective search space:   188762
Effective search space used:   188762
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)