Query= MSMg01no302_o04.b1 MSMg01no302_o04.b1 CHROMAT_FILE:
MSMg01no302_o04.b1 PHD_FILE: MSMg01no302_o04.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:40:38 2005
(539 letters)
>mm_chr12_92430458_92431400
Length = 943
Score = 942 bits (487), Expect = 0.0
Identities = 512/523 (97%), Gaps = 6/523 (1%)
Strand = Plus / Minus
Query: 23 atcttgttgatttagtgggtcttagtttttgatgttctccatccttctggttcttacatt 82
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 943 atcttgttgatttagtgggtcttagtttttgatgttctccatccttctggctcttacatt 884
Query: 83 ctttttaccttatctttctcaggattccctgagttctgagggatgggatttgatggggac 142
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 883 ctttttaccttatctttctcaggattccctgagttctgagggatgggatttgatggagac 824
Query: 143 atcccattcagggtccagtgtcttactctctgcacattattcctctgtgggtgtctgtat 202
||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 823 atctcatttagggtccagtgtcttactctctgcacattattcctctgtgggtgtctgtat 764
Query: 203 ttgttcctatctactgcaggaggactcctttctgatgatggctgagcaagatactgatct 262
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 763 ttgttcctatctactgcaggaggactcctttctgatgatggctgagcaagatactgatct 704
Query: 263 atgtatagcagaatgccattaggagtcattttattat--gtctcttatttcatcctatct 320
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 703 atgtatagcagaatgccattaggagtcattttattataagtctcttatttcatcctatct 644
Query: 321 gttaaatagcatctaaggtatagaagtctatttttttttttagagtctatagagtcta-- 378
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 643 gttaaatagtatctaaggtatagaagtctatttttttttttagagtctatagagtctatt 584
Query: 379 --ttttttttttagtgtttatggtactcaaaagactgcaggttattatagaatagtgata 436
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 583 ttttttttttttagtgtttatggtactcaaaagactgcaggttattatagaatagtgata 524
Query: 437 tttgtgatcaacaagttatggtttggctagagaaatggcacagtgtttaagagattgctc 496
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 523 tttgtgatcaacaagttatggtttggctagagaaatggcacagtgtttaagagattgctc 464
Query: 497 ttctgaaggtcctgagttcaaatctcagcaaccacatggtggc 539
|||||||||||||||||||||||||||||||||||||||||||
Sbjct: 463 ttctgaaggtcctgagttcaaatctcagcaaccacatggtggc 421
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 539
Length of database: 943
Length adjustment: 10
Effective length of query: 529
Effective length of database: 933
Effective search space: 493557
Effective search space used: 493557
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no302_o04.g1 MSMg01no302_o04.g1 CHROMAT_FILE:
MSMg01no302_o04.g1 PHD_FILE: MSMg01no302_o04.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:40:38 2005
(291 letters)
>mm_chr12_92258355_92259045
Length = 691
Score = 507 bits (262), Expect = e-148
Identities = 280/286 (97%)
Strand = Plus / Plus
Query: 1 cagttccaaggttttcattttcatgaggaaagggaaaaggaaagaaagccagaggcccat 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 cagttccaaggttttcattttcatgaggaaagggaaaaggaaagaaagccagaggcccat 260
Query: 61 gaagttctgactgctttggccaggtctgtggcagactcaggttggaatgcagtaccacat 120
|||||| |||| ||||||||||| ||||||||||||||||||||||| ||||| ||||||
Sbjct: 261 gaagttgtgacggctttggccagatctgtggcagactcaggttggaacgcagtgccacat 320
Query: 121 cctttccaccgtatcaagtaagtgatgtgtaaacacagatgacagagacatccatatttc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 cctttccaccgtatcaagtaagtgatgtgtaaacacagatgacagagacatccatatttc 380
Query: 181 cttttctcttcccaaaatggggttaagagaagaggaagagacaggaggagggcaagagga 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 cttttctcttcccaaaatggggttaagagaagaggaagagacaggaggagggcaagagga 440
Query: 241 cgcaccacactcaagcaagaataaagtcaagtgtatcaaaatagga 286
||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 441 cgcaccacactcaagcaagaataaagtcaagcgtatcaaaatagga 486
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 291
Length of database: 691
Length adjustment: 9
Effective length of query: 282
Effective length of database: 682
Effective search space: 192324
Effective search space used: 192324
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
