BAC Information

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BAC

Clone NameMSMg01-303C24
Chromosome12 (Build37)
Map Location 84,941,798 - 84,942,087
singlet/doubletsinglet
Overlap genenone
Upstream geneRgs6, Dpf3, Wdr21, Zfyve1
Downstream geneLOC626950, Rbm25, Psen1, Papln, Numb, LOC100042325, 2410016O06Rik, Acot2, Acot1, Acot4, Acot3, Acot5, LOC666963, Acot6, Dnalc1, Pnma1, C130039O16Rik, EG432676, Zadh1, Zfp410, 9830169C18Rik, Coq6, Entpd5, 2900006K08Rik, Rnf113a2, Aldh6a1, Lin52, Chx10
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-303C24.T7 (MSMg01no303_c24.b1)MSMg01-303C24.TJ (MSMg01no303_c24.g1)
ACCAG428853AG428854
length766742
length of high quality
(start - end)
177 (68 - 244)293 (70 - 362)
definitionCHROMAT_FILE: MSMg01no303_c24.b1 PHD_FILE: MSMg01no303_c24.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:41:02 2005CHROMAT_FILE: MSMg01no303_c24.g1 PHD_FILE: MSMg01no303_c24.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:41:02 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTCCAAAACCGCGGAATTCCA
AGAGTATTTCAATAATCAGCTATGGTCTCTGTGTGTAATAATACTGCCTG
GCCAAGCCTGACTAGTCCCTGGTGCATCAGTGACAAGCCTGTTATGGGGG
GTTGAACAACTGTTTCCCGCCTGATTATATTTGATACCTAATTTACAGGA
CAAAATTCATGTCTGGGTCACAAATCAAGCCAAAAGCCTGAGGCTGGCTA
TTTCATGGGGTGGACTGCAGAAGCTACTTCTGCTGTTTTGGCCAAACTGA
TGTGCCCATCACATCTTTTTCTATCTAACCGTTGATGCCCATATGCGAGT
GCTGCTGTCCCTGCCGCTCACAGAAGCTTGTCTTTGTGATGGACACCGAT
GGCTATAAACCCCCCCCTTTGTAACTCAGTCAATTTTATTATTAATAGGC
TCCCGTTGAGTGACCAGTCACATATGCCCTCTCTATCACTTCCTCCACGG
TCCATTTAATTCTCCACATTCCCGTTCTCACCTACCCGTTTACCCTACCT
CACCCTCGTCCTTCCTTTATCCCTAACTCTCCTTTCTTTGCCTTATACAC
TGCCACTTCTTTCTTAATACATACATACTTATTCTTCTTCCCCTTTACTG
TCCTCCTTTTCCTGTCTTTTTTCTTGTGCTTACCCTTTCCTCCCCCTCCC
TATCGTTTTCATTCTCTTTCTTGTTCCTTCCCCTTCCCCTCCATAACGGT
TCCCTATCTTTTTCGG
ATGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXCAGGACAGCCAGGACTATACAGAGAAACCCT
GTCTCGAAAAACAAACTAACACCAAAACAAAACAAAACAAAAAACACCAA
AGAAAACAAAACAAAATACCAAGGGGGGAGGGAAAGAGTGTAAGAGAGCT
AAACCACTGAAAATATAAAAAGATCTGAGAGACCCAAGTAGCCAATATAA
GAAGCAAAATTAGTCCCCACACCCTGTTGTTCATGACATTGTGTTTCTGC
AGCGAAAGGGTTCAAGGGCTCTGGGTTCCTCTTCCACAGAAAAGCCACGC
AAAATAAAATGCCTCCATCNTTCTCCGGGCTGCCACAGATGGCTCAGCCT
CTTAAGAGCACTCCTGGCTATCGCTGAGAACAAAAAAAAACCTCACAACT
GTCCATAACCACAGTTGCAGAGGCTCCCATGCCCTCAGACATCTATGGGA
TGCATGCAGGTGGTAGCGCACATGCATGCACCCAGGCACACATGCATGCA
CCCAGGCACACATGCATGCACCCAGGCACACATGCATTCACCCAGGCACA
CATGCATGCACCCAGGCACACATGCATGCACCCAGGCACACATGCATACA
CAGAATATAAAGGAAAACATCTTTCTTCTGCACCTTAATTGTCCTCCCTG
GAGGGATCTATTTCCCACGGCTTTAAATTTTTTTCTTTTCTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no303_c24.g1 MSMg01no303_c24.g1 CHROMAT_FILE:
MSMg01no303_c24.g1 PHD_FILE: MSMg01no303_c24.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:41:02 2005
         (293 letters)



>mm_chr12_84941501_84942193
          Length = 693

 Score =  520 bits (269), Expect = e-152
 Identities = 286/293 (97%), Gaps = 3/293 (1%)
 Strand = Plus / Minus

                                                                       
Query: 1   caggacagccaggactatacagagaaaccctgtctcgaaaaacaaactaacaccaaaaca 60
           ||||||||||||||||||||||||||||||||||||||||||||||| ||||  ||||||
Sbjct: 587 caggacagccaggactatacagagaaaccctgtctcgaaaaacaaacaaacaaaaaaaca 528

                                                                       
Query: 61  aaacaaaacaaaaaacaccaaagaaaacaaaacaaaataccaaggggggagggaaagagt 120
           ||||||   |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 527 aaacaa---aaaaaacaccaaagaaaacaaaacaaaataccaaggggggagggaaagagt 471

                                                                       
Query: 121 gtaagagagctaaaccactgaaaatataaaaagatctgagagacccaagtagccaatata 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 470 gtaagagagctaaaccactgaaaatataaaaagatctgagagacccaagtagccaatata 411

                                                                       
Query: 181 agaagcaaaattagtccccacaccctgttgttcatgacattgtgtttctgcagcgaaagg 240
           |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 410 agaagcaaaattagtccccacaccctgttgtttatgacattgtgtttctgcagcgaaagg 351

                                                                
Query: 241 gttcaagggctctgggttcctcttccacagaaaagccacgcaaaataaaatgc 293
           |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 350 gttcaagggctctgggttcctcttccacagaaaagccacgcaaaataaaatgc 298


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 293
Length of database: 693
Length adjustment: 9
Effective length of query: 284
Effective length of database: 684
Effective search space:   194256
Effective search space used:   194256
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)