Query= MSMg01no303_i23.b1 MSMg01no303_i23.b1 CHROMAT_FILE:
MSMg01no303_i23.b1 PHD_FILE: MSMg01no303_i23.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:41:30 2005
(602 letters)
>mm_chr12_11438392_11439393
Length = 1002
Score = 1071 bits (554), Expect = 0.0
Identities = 590/602 (98%), Gaps = 2/602 (0%)
Strand = Plus / Minus
Query: 1 acccttgcaactcactgacttgccatctcggcctagtaagggagacccca-atcccaatg 59
|||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||
Sbjct: 888 acccttgcaactcactgacttgccatctcggcctagtaagggag-ccccagatcccaatg 830
Query: 60 agagaccctgtctcaaacacaaaaacaaacagcaaacaacaacaacaaaagagagattgc 119
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 829 agagaccctgtctcaaacacaaaaacaaacagcaaacaacgacaacaaaagagagattga 770
Query: 120 gtttgatttatggcttccatgacttccatacatgtgagcacagacatgtacactcacaca 179
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 769 gtttgatttatggcttccatgacttccatacatgtgagcacagacatgtacactcacaca 710
Query: 180 tgcatgtgcatacatgcaaagaagggaacatattcaacaaatctaaggtttgacattgtc 239
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 709 tgcatgtgcatacatgcaaagaagggaacatattcaacaaatctaaggtttgacattgtc 650
Query: 240 tctctcagctatatgtaatgggtatgtcattaattctttaaaaaatgtgtaatgccaaag 299
||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||
Sbjct: 649 tctctcagctatatgtaataggtatgtcattaattctttaaagaatgtgtaatgccaaag 590
Query: 300 aatgatagctgtttctatttccctcagttatctagcctgttcctccaacataaataaggt 359
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 589 aatgatagctgtttctatttccctcagttatctagcctgttcctccaacataaataaggt 530
Query: 360 agatggtatttaagaaaaactatcaccttcaagactttatgaacagtatgaaatcaaggt 419
||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 529 agatggtatataagaaaaactatcaccttcaagactttatgaacagtatgaaaccaaggt 470
Query: 420 gttagtgagatttataggatttctacaatatctacatatatttcctagcagaaactctaa 479
|||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 469 gttagtaagatttatagtatttctacaatatctacatatatttcctagcagaaactctaa 410
Query: 480 tgtttgttaattgaatatttgcatgtaactttcaattaaagtaattaaataatttctgtg 539
||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 409 tgtttgtcaattgaatgtttgcatgtaactttcaattaaagtaattaaataatttctgtg 350
Query: 540 aagaccatatgcacaattaattctgttttaagaatctttgggggaactagggagatgact 599
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 349 aagaccatatgcacaattaattctgttttaagaatctttgggggaactagggagatgact 290
Query: 600 ca 601
||
Sbjct: 289 ca 288
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 602
Length of database: 1002
Length adjustment: 10
Effective length of query: 592
Effective length of database: 992
Effective search space: 587264
Effective search space used: 587264
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no303_i23.g1 MSMg01no303_i23.g1 CHROMAT_FILE:
MSMg01no303_i23.g1 PHD_FILE: MSMg01no303_i23.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:41:30 2005
(676 letters)
>mm_chr12_11274088_11275163
Length = 1076
Score = 1226 bits (634), Expect = 0.0
Identities = 670/692 (96%), Gaps = 16/692 (2%)
Strand = Plus / Plus
Query: 1 caggttagctcaggctacagagaaaaactgtcc----------------aaaaaaaaaaa 44
|||||||||||||||||||||| |||||||||| |||||||||||
Sbjct: 185 caggttagctcaggctacagagcaaaactgtccaaaaaaaaaaaaaaaaaaaaaaaaaaa 244
Query: 45 aaaacccaccagtagttgtctgaatgggtgtagaaagtctagagacaaagcttacccctt 104
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 245 aaaacccaaaagtagttgtctgaatgggtgtagaaagtctagagacaaagcttacccctt 304
Query: 105 gtaattgcttaaaacatgcttttgttccacacagagggtagacagtgtgtgcaaagtaat 164
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 305 gtaattgcttaaaacatgcttttgttccacacagagggtagacagtgtgtgcaaagtaat 364
Query: 165 gccacctccttacctcttggttctaagtcacagaactgactcctgagagattaattcagt 224
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 365 gccacctccttacctcttggttctaagtcacagaactgactcctgagagattaattcagt 424
Query: 225 ataaagtgttcagtattgagctcaacaagctagtataaacagcatgttgagtgttattgt 284
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 425 ataaagtgttcagtattgagctcaacaagctagtataaacagcatgttgagtgttattgt 484
Query: 285 aaaacaaacgtcccccccacccccagttaatttttctaagtgccaagggtagaattttat 344
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 485 aaaacaaacgtcccccccacccccagttaatttttctaagtgccaagggtagaattttat 544
Query: 345 gcacaacttgcctgaatcttgactatttttattttgttaggtaaatcaatcaagatctag 404
| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 545 gtaaaacttgcctgaatcttgactatttttattttgttaggtaaatcaatcaagatctag 604
Query: 405 taggcaagctaggagtattattcagtggtagattgctactttaacatgtagggaccctga 464
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 605 taggcaagctaggagtattattcagtggtagattgctactttaacatgtagggaccctga 664
Query: 465 atctaatgtgacccttaaaaggtagttgacttactttcaagaaataatagatacctattt 524
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 665 atctaatgtgacccttaaaaggtagttgacttactttcaagaaataatagatacctattt 724
Query: 525 aaaaaattcactgtaatagcacatgcattatatttgaagtacttgggatttttataattt 584
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 725 aaaaaattcactgtaatagcacatgcattatatttgaagtacttgggatttttattattt 784
Query: 585 tatgagtgggtggtttgcctgcaggtctatctgcaccacatgcatccctaatgcctgtgg 644
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 785 tatgagtgggtggtttgcctgcaggtctatctgcaccacatgcatccctaatgcctgtgg 844
Query: 645 agctgttagatgatgtaggactgaagctagag 676
||||||||||||||||||||||||||||||||
Sbjct: 845 agctgttagatgatgtaggactgaagctagag 876
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 39
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 676
Length of database: 1076
Length adjustment: 10
Effective length of query: 666
Effective length of database: 1066
Effective search space: 709956
Effective search space used: 709956
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
