BAC Information

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BAC

Clone NameMSMg01-303L13
Chromosome12 (Build37)12 (Build37)
Map Location 84,148,894 - 84,149,50284,604,869 - 84,605,396
singlet/doubletsingletsinglet
Overlap geneRgs6
Upstream geneSipa1l1, LOC432675, EG666911
Downstream geneDpf3, Wdr21, Zfyve1, LOC626950, Rbm25, Psen1, Papln, Numb
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-303L13.T7 (MSMg01no303_l13.b1)MSMg01-303L13.TJ (MSMg01no303_l13.g1)
ACCAG429231AG429232
length736724
length of high quality
(start - end)
611 (43 - 653)578 (70 - 647)
definitionCHROMAT_FILE: MSMg01no303_l13.b1 PHD_FILE: MSMg01no303_l13.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:41:42 2005CHROMAT_FILE: MSMg01no303_l13.g1 PHD_FILE: MSMg01no303_l13.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:41:42 2005
singlet/doubletsingletsinglet
BLAST hituniqueplural
Map location.(84,148,894 - 84,149,502)(84,604,869 - 84,605,396)
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAAT
TCTCTCGTTACCCGTAGCAATTAAAGATAAGTTGTAGCCCTGTCACCGAG
CAGCCTTCTAGAAGCAGCTCTTAAAATTAGATTGTCTGATCCACAATTAA
GATGTTTAATTATTTGCTAAAACTCCTTCTGTTTTCCGCTCCTGCAAGAA
GTGAGGAAGTGATTTTTTTCAACTCTAATTGTGCATTTCAATCAGGCAAA
GCCCACCAGAAAGAAAAGAAAAAAAAAAAGGCAAAACTCTGATCAATGAG
ACGGTTCCCACAGCTGTCCTTCCATCAGAAAATATTCAGAAAAAATGTCT
AATTTACAGTCTAATTAGAAAATGGGGGAGATGCCTCCAGGAAAAAAAAA
GAAACTTCTAAGCACCTAAAGTTGCTTTTCATCAGTGTGCTGCAAGTCTA
GGGTTTGTTTTCTGCATTCGGCACACATTCACTTGTCTGGTTTCACTGGT
GTTATGAACACTCTAAGATCACACTTACAGTTATCTACTCTGGGGTTCCC
ATTAGTGCCAAGTGAACCCAGGGCCTGTTCTTATTGGGCGAGCATTCTAC
CACTGAGCTACATAAACCCAGCCCTCTCCTCTGATGTTCTTAATGACCCT
CCTCGGAGGACAAAGCTAACGCAAGTTATGTGAACCCCTATCTCCGTGCT
TTCTGAGAATTATCAGTAGTGTTCACTCTAATGTCT
ACTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXATCTTCTACTCCATGGCCAATCCTGATTAGA
GGACTACAGGCAATCAAGAGTTGACTAAATACTCTTCCCCGGCAGTGATC
CCTTTAATTACAGATCTCAGCCCTCCTGGGTCTACTCAGGACAGCAGGAA
GCATAGTAATTAATCTCTTCTTTGAGTTCACATTCCTAGAAAATTCCAGA
CTCTTTAGCCAGGGCCCATGACTAGATGCTGCTCCCGATATCTTGAGAGG
CCTAAAGTGCACAGCCAGTATTAAAGCTTTGCATCTGAGATTGATGGTAG
GCTCTGCATGACTATTCAGGATGGTCCCCACACACCCTGGGTGAGGGATG
GACATTACTCTGGCAGATGGTAGCCAGAAGCTTAGAGTTCTGGGGAAGAA
TTTAACAGAAGAATCAGCTAAATCCCTCATATGGATGTCATCCATCTCTC
ACGCCCTGGCTGGCAGTATCCTCCTGTCAAAGGTAACAACTACCTCAACT
CGGATCTCAAACTCCCATAGAGGGAGCTTTACCAAAGACTTTTGTCTGCC
TGCAGATCCTAGAGAGGCTCAGATGTGCAGGCTGACCTTACCTTGTGGGA
TGAGCGGGATGACTGATGGGAAAGGATTTTGATTTCTAGTGCTTTTTAAT
TTCCGTCGCGTTTTCTTGGGTGCN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no303_l13.b1 MSMg01no303_l13.b1 CHROMAT_FILE:
MSMg01no303_l13.b1 PHD_FILE: MSMg01no303_l13.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:41:42 2005
         (611 letters)



>mm_chr12_84148690_84149702
          Length = 1013

 Score = 1116 bits (577), Expect = 0.0
 Identities = 601/609 (98%), Gaps = 2/609 (0%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattctctcgttacccgtagcaattaaagataagttgtagccctgtcaccgagcagcct 64
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattctctcgttagccgtagcaattaaagataagttgtagccctgtcaccgagcagcct 264

                                                                       
Query: 65  tctagaagcagctcttaaaattagattgtctgatccacaattaagatgtttaattatttg 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 tctagaagcagctcttaaaattagattgtctgatccacaattaagatgtttaattatttg 324

                                                                       
Query: 125 ctaaaactccttctgttttccgctcctgcaagaagtgaggaagtga-tttttttcaactc 183
           |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 325 ctaaaactccttctgttttccgctcctgcaagaagtgaggaagtgattttttttcaactc 384

                                                                       
Query: 184 taattgtgcatttcaatcaggcaaagcccaccagaaagaaaagaaaaaaaaaaaggcaaa 243
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 taattgtgcatttcaaccaggcaaagcccaccagaaagaaaagaaaaaaaaaaaggcaaa 444

                                                                       
Query: 244 actctgatcaatgagacggttcccacagctgtccttccatcagaaaatattcagaaaaaa 303
           ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 445 actctgatcaatgagacggttcccacagctgcccttccatcagaaaatattcagaaaaaa 504

                                                                       
Query: 304 tgtctaatttacagtctaattagaaaatgggggagatgcctccagg-aaaaaaaaagaaa 362
           |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 505 tgtctaatttacagtctaattagaaaatgggggagatgcctccaggaaaaaaaaaagaaa 564

                                                                       
Query: 363 cttctaagcacctaaagttgcttttcatcagtgtgctgcaagtctagggtttgttttctg 422
           |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 cttctaagcagctaaagttgcttttcatcagtgtgctgcaagtctagggtttgttttctg 624

                                                                       
Query: 423 cattcggcacacattcacttgtctggtttcactggtgttatgaacactctaagatcacac 482
           ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 625 cattcggcacacattcacttgtctggtttcactggtgttatgaacactcaaagatcacac 684

                                                                       
Query: 483 ttacagttatctactctggggttcccattagtgccaagtgaacccagggcctgttcttat 542
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 ttacagttatctactctggggttcccattagtgccaagtgaacccagggcctgttcttat 744

                                                                       
Query: 543 tgggcgagcattctaccactgagctacataaacccagccctctcctctgatgttcttaat 602
           |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 745 tgggcgagcattctaccactgagctacatagacccagccctctcctctgatgttcttaat 804

                    
Query: 603 gaccctcct 611
           |||||||||
Sbjct: 805 gaccctcct 813


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 611
Length of database: 1013
Length adjustment: 10
Effective length of query: 601
Effective length of database: 1003
Effective search space:   602803
Effective search space used:   602803
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no303_l13.g1 MSMg01no303_l13.g1 CHROMAT_FILE:
MSMg01no303_l13.g1 PHD_FILE: MSMg01no303_l13.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:41:42 2005
         (578 letters)



>mm_chr12_84604869_84605846
          Length = 978

 Score =  880 bits (455), Expect = 0.0
 Identities = 508/529 (96%), Gaps = 9/529 (1%)
 Strand = Plus / Minus

                                                                       
Query: 1   atcttctactccatggccaatcctgattagaggactacaggcaatcaagagttgactaaa 60
           ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 528 atcttctactccatggccaatcctgattagaggaccacaggcaatcaagagttgactaaa 469

                                                                       
Query: 61  tactcttccccggcagtgatccctttaattacagatctcagccctcctgggtctactcag 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 468 tactcttccccggcagtgatccctttaattacagatctcagccctcctgggtctactcag 409

                                                                       
Query: 121 gacagcaggaagcatagtaattaatctcttctttgagttcacattcctagaaaattccag 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 408 gacagcaggaagcatagtaattaatctcttctttgagttcacattcctagaaaattccag 349

                                                                       
Query: 181 actctttagccagggcccatgactagatgctgctcccgatatcttgagaggcctaaagtg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 348 actctttagccagggcccatgactagatgctgctcccgatatcttgagaggcctaaagtg 289

                                                                       
Query: 241 cacagccagtattaaagctttgcatctgagattgatggtaggctctgcatga-ctattca 299
           |||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||
Sbjct: 288 cacagccagtattaaagctttgcatctgagattgatggtaggctctgcatgagc-attca 230

                                                                       
Query: 300 ggatggtccccacacaccctgggtgaggg---a----tggacattactctggcagatggt 352
           |||||||||||||||||  ||||||||||   |    ||||||| |||||||||||||||
Sbjct: 229 ggatggtccccacacactgtgggtgaggggtgaggggtggacatcactctggcagatggt 170

                                                                       
Query: 353 agccagaagcttagagttctggggaagaatttaacagaagaatcagctaaatccctcata 412
           |||||||||||||||||||||||||||||||||| || ||||||||||||||||||  ||
Sbjct: 169 agccagaagcttagagttctggggaagaatttaaaaggagaatcagctaaatcccttgta 110

                                                                       
Query: 413 tggatgtcatccatctctcacgccctggctggcagtatcctcctgtcaaaggtaacaact 472
           ||||||||| ||||||||| | ||||||||||||||||||||||||||||||||||||||
Sbjct: 109 tggatgtcacccatctctctctccctggctggcagtatcctcctgtcaaaggtaacaact 50

                                                            
Query: 473 acctcaactcggatctcaaactcccatagagggagctttaccaaagact 521
           ||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 49  acctcaacttggatctcaaactcccatagagggagctttaccaaagact 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 578
Length of database: 978
Length adjustment: 10
Effective length of query: 568
Effective length of database: 968
Effective search space:   549824
Effective search space used:   549824
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)