Query= MSMg01no303_l13.b1 MSMg01no303_l13.b1 CHROMAT_FILE:
MSMg01no303_l13.b1 PHD_FILE: MSMg01no303_l13.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:41:42 2005
(611 letters)
>mm_chr12_84148690_84149702
Length = 1013
Score = 1116 bits (577), Expect = 0.0
Identities = 601/609 (98%), Gaps = 2/609 (0%)
Strand = Plus / Plus
Query: 5 gaattctctcgttacccgtagcaattaaagataagttgtagccctgtcaccgagcagcct 64
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattctctcgttagccgtagcaattaaagataagttgtagccctgtcaccgagcagcct 264
Query: 65 tctagaagcagctcttaaaattagattgtctgatccacaattaagatgtttaattatttg 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 tctagaagcagctcttaaaattagattgtctgatccacaattaagatgtttaattatttg 324
Query: 125 ctaaaactccttctgttttccgctcctgcaagaagtgaggaagtga-tttttttcaactc 183
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 325 ctaaaactccttctgttttccgctcctgcaagaagtgaggaagtgattttttttcaactc 384
Query: 184 taattgtgcatttcaatcaggcaaagcccaccagaaagaaaagaaaaaaaaaaaggcaaa 243
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 taattgtgcatttcaaccaggcaaagcccaccagaaagaaaagaaaaaaaaaaaggcaaa 444
Query: 244 actctgatcaatgagacggttcccacagctgtccttccatcagaaaatattcagaaaaaa 303
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 445 actctgatcaatgagacggttcccacagctgcccttccatcagaaaatattcagaaaaaa 504
Query: 304 tgtctaatttacagtctaattagaaaatgggggagatgcctccagg-aaaaaaaaagaaa 362
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 505 tgtctaatttacagtctaattagaaaatgggggagatgcctccaggaaaaaaaaaagaaa 564
Query: 363 cttctaagcacctaaagttgcttttcatcagtgtgctgcaagtctagggtttgttttctg 422
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 cttctaagcagctaaagttgcttttcatcagtgtgctgcaagtctagggtttgttttctg 624
Query: 423 cattcggcacacattcacttgtctggtttcactggtgttatgaacactctaagatcacac 482
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 625 cattcggcacacattcacttgtctggtttcactggtgttatgaacactcaaagatcacac 684
Query: 483 ttacagttatctactctggggttcccattagtgccaagtgaacccagggcctgttcttat 542
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 ttacagttatctactctggggttcccattagtgccaagtgaacccagggcctgttcttat 744
Query: 543 tgggcgagcattctaccactgagctacataaacccagccctctcctctgatgttcttaat 602
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 745 tgggcgagcattctaccactgagctacatagacccagccctctcctctgatgttcttaat 804
Query: 603 gaccctcct 611
|||||||||
Sbjct: 805 gaccctcct 813
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 611
Length of database: 1013
Length adjustment: 10
Effective length of query: 601
Effective length of database: 1003
Effective search space: 602803
Effective search space used: 602803
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no303_l13.g1 MSMg01no303_l13.g1 CHROMAT_FILE:
MSMg01no303_l13.g1 PHD_FILE: MSMg01no303_l13.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:41:42 2005
(578 letters)
>mm_chr12_84604869_84605846
Length = 978
Score = 880 bits (455), Expect = 0.0
Identities = 508/529 (96%), Gaps = 9/529 (1%)
Strand = Plus / Minus
Query: 1 atcttctactccatggccaatcctgattagaggactacaggcaatcaagagttgactaaa 60
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 528 atcttctactccatggccaatcctgattagaggaccacaggcaatcaagagttgactaaa 469
Query: 61 tactcttccccggcagtgatccctttaattacagatctcagccctcctgggtctactcag 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 468 tactcttccccggcagtgatccctttaattacagatctcagccctcctgggtctactcag 409
Query: 121 gacagcaggaagcatagtaattaatctcttctttgagttcacattcctagaaaattccag 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 408 gacagcaggaagcatagtaattaatctcttctttgagttcacattcctagaaaattccag 349
Query: 181 actctttagccagggcccatgactagatgctgctcccgatatcttgagaggcctaaagtg 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 348 actctttagccagggcccatgactagatgctgctcccgatatcttgagaggcctaaagtg 289
Query: 241 cacagccagtattaaagctttgcatctgagattgatggtaggctctgcatga-ctattca 299
|||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||
Sbjct: 288 cacagccagtattaaagctttgcatctgagattgatggtaggctctgcatgagc-attca 230
Query: 300 ggatggtccccacacaccctgggtgaggg---a----tggacattactctggcagatggt 352
||||||||||||||||| |||||||||| | ||||||| |||||||||||||||
Sbjct: 229 ggatggtccccacacactgtgggtgaggggtgaggggtggacatcactctggcagatggt 170
Query: 353 agccagaagcttagagttctggggaagaatttaacagaagaatcagctaaatccctcata 412
|||||||||||||||||||||||||||||||||| || |||||||||||||||||| ||
Sbjct: 169 agccagaagcttagagttctggggaagaatttaaaaggagaatcagctaaatcccttgta 110
Query: 413 tggatgtcatccatctctcacgccctggctggcagtatcctcctgtcaaaggtaacaact 472
||||||||| ||||||||| | ||||||||||||||||||||||||||||||||||||||
Sbjct: 109 tggatgtcacccatctctctctccctggctggcagtatcctcctgtcaaaggtaacaact 50
Query: 473 acctcaactcggatctcaaactcccatagagggagctttaccaaagact 521
||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 49 acctcaacttggatctcaaactcccatagagggagctttaccaaagact 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 578
Length of database: 978
Length adjustment: 10
Effective length of query: 568
Effective length of database: 968
Effective search space: 549824
Effective search space used: 549824
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|