Query= MSMg01no303_m17.b1 MSMg01no303_m17.b1 CHROMAT_FILE:
MSMg01no303_m17.b1 PHD_FILE: MSMg01no303_m17.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:41:47 2005
(694 letters)
>mm_chr12_96074435_96075528
Length = 1094
Score = 1284 bits (664), Expect = 0.0
Identities = 685/692 (98%), Gaps = 2/692 (0%)
Strand = Plus / Minus
Query: 4 ggaattcattagggacgcttgggtaagtcttaagtagactcatgacacatgcatcttcag 63
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 894 ggaattcattagggacgtttgggtaagtcttaagtagactcatgacacatgcatcttcag 835
Query: 64 atgaaatagggctgc-accttaatcagtctatgtgtgggagaactaaaaccactgaactt 122
||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 834 atgaaatagggct-ctaccttaatcagtctatgtgtgggagaactaaaaccactgaactt 776
Query: 123 ttcaaatggatttaaggaggggaaaaaggataaattaacattccagggacatacatgagg 182
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 775 ttcaaatggatttaaggaggggaaaaaggataaattaacattccagggacatacatgagg 716
Query: 183 tgcttgtctgtaaatagcatcctgtcctgagtgaaactgaagaaaataatgtactgggat 242
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 715 tgcttgtctgtaaatagcatcctgtcctgagtgaaactgaagaaaataatgtactgggat 656
Query: 243 aattgaaatagcaaatgtgttagtcagagctggaaccgtggtagagaaaggacacatatt 302
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 655 aattgaaatagcaaatgtgttagtcagagctggaaccgtggtagagaaaggacacatatt 596
Query: 303 gcataggaagcagggctttgaggatacttttccactacctttattcaataagaaagaaat 362
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 595 gcataggaagcagggctttgaggatacttttccactacctttattcaataagaaagaaat 536
Query: 363 aatcttgtactctctcaaacatgttgtactgagaaaactttaagaacacaaaacacccaa 422
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 535 aatcttgtactctctcagacatgttgtactgagaaaactttaagaacacaaaacacccaa 476
Query: 423 tccttctcacctgaaagttcagatgtgcaaaaagcagaaagttgctaaaattactgtccc 482
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 475 tccttctcacctgaaagttcagatgtgcaaaaagcagaaagttgctaaaatcactgtccc 416
Query: 483 aatatgtaagacaaaagtgccattaaatgtacaaccagaatcgtgccatccaaacaaact 542
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 415 aatatgtaagacaaaagtgccattaaatgtacaaccagaatcgtgccatccaaacaaact 356
Query: 543 gtaggagaataactggaatttctaaaaagatttctttttaaaaaaggaatacattattta 602
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 355 gtaggagaataactggaatttctaaaaagatttctttttaaaaaaggaatacattattta 296
Query: 603 cagcttaagtgggttcaaatgttataatcatcagacattaactatgtttcaacagtattt 662
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 295 cagcttaagtgggttcaaatgttataatcatcagacattaactatgtttcaacagtattt 236
Query: 663 tatttgccagtgagaccactgtcctcctctca 694
|||||| |||||| ||||||||||||||||||
Sbjct: 235 tatttgtcagtgaaaccactgtcctcctctca 204
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 694
Length of database: 1094
Length adjustment: 10
Effective length of query: 684
Effective length of database: 1084
Effective search space: 741456
Effective search space used: 741456
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no303_m17.g1 MSMg01no303_m17.g1 CHROMAT_FILE:
MSMg01no303_m17.g1 PHD_FILE: MSMg01no303_m17.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:41:48 2005
(669 letters)
>mm_chr12_95904746_95905814
Length = 1069
Score = 1286 bits (665), Expect = 0.0
Identities = 668/669 (99%)
Strand = Plus / Plus
Query: 1 tataaaattttaagggtagtatagttgaggaagttattatacaatcagagatttggttta 60
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tataaaaatttaagggtagtatagttgaggaagttattatacaatcagagatttggttta 260
Query: 61 aattttccccactattcatttgactgtaggtattgctcagtttctgttatgggttgttat 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aattttccccactattcatttgactgtaggtattgctcagtttctgttatgggttgttat 320
Query: 121 gttggtactatggaggaacacagttttgcataatttctttacctgtatattttgtgttga 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gttggtactatggaggaacacagttttgcataatttctttacctgtatattttgtgttga 380
Query: 181 aagcagaacaaagttagaatttactaaattaagtcaggaagaatggcaattcatgaaaac 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aagcagaacaaagttagaatttactaaattaagtcaggaagaatggcaattcatgaaaac 440
Query: 241 atattctgtatgcattatctgcagaagacaaattgaacaggtgtaatacatatacaagca 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 atattctgtatgcattatctgcagaagacaaattgaacaggtgtaatacatatacaagca 500
Query: 301 attaatggagaaaggaaaaattgaaaatgaatcaccaagaacaattcagtgagttgaggt 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 attaatggagaaaggaaaaattgaaaatgaatcaccaagaacaattcagtgagttgaggt 560
Query: 361 gatttaaattttttaataaaaaagaagtgaacatgaaaagactcttattctatctaaagc 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 gatttaaattttttaataaaaaagaagtgaacatgaaaagactcttattctatctaaagc 620
Query: 421 aaatgcatgttctattttataaatgctgatatcacaggatattttacaaatattcttcat 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 aaatgcatgttctattttataaatgctgatatcacaggatattttacaaatattcttcat 680
Query: 481 tttatcaccgtaagatccaacagaggccccttcgaggacagccatgctaggttcctgtct 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 tttatcaccgtaagatccaacagaggccccttcgaggacagccatgctaggttcctgtct 740
Query: 541 atacacacatcatagcatcagtaatagtgtcaggtgttggagccacccctcgagctggat 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 atacacacatcatagcatcagtaatagtgtcaggtgttggagccacccctcgagctggat 800
Query: 601 cctaatttgggcctgtcactggacctcctttacctcagtctcttctccatttttgtctct 660
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 801 cctaatttgggcctgtcactggacctcctttacctcagtctcttctccatttttgtctct 860
Query: 661 tctgttctt 669
|||||||||
Sbjct: 861 tctgttctt 869
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 35
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 669
Length of database: 1069
Length adjustment: 10
Effective length of query: 659
Effective length of database: 1059
Effective search space: 697881
Effective search space used: 697881
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
