BAC Information

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BAC

Clone NameMSMg01-304A18
Chromosome12 (Build37)
Map Location 44,734,862 - 44,784,122
singlet/doubletdoublet
Overlap geneLOC100039059
Upstream genenone
Downstream geneENSMUSG00000066507, LOC100039081, LOC664854, Dnajb9, LOC100039062, Pnpla8, Nrcam, EG620025
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-304A18.T7 (MSMg01no304_a18.b1)MSMg01-304A18.TJ (MSMg01no304_a18.g1)
ACCAG429456AG429457
length1,3981,293
length of high quality
(start - end)		760 (58 - 817)509 (79 - 587)
definitionCHROMAT_FILE: MSMg01no304_a18.b1 PHD_FILE: MSMg01no304_a18.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:42:10 2005CHROMAT_FILE: MSMg01no304_a18.g1 PHD_FILE: MSMg01no304_a18.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:42:10 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(44,783,445 - 44,784,122)(44,734,862 - 44,735,366)
sequence
TTTCGGTCNNNNNNCCCACTCTNNNNNNNNCCATGTGGGCGCTATAGACT
CCTATAGGGAGAGGATCCGCGGAATTCCAGAGACAAAGTTCAGACATTAG
ACAGAAGAAAGGACTATCCAGAGATTACCCGACTCCGTTATCCATCCCAT
ATACATTAAGTATTTTTATTTAGTTACTTCTGGCTTTTGGGAAAAGCATT
ATCTCTTTTGCAGGATAATTCCAACTAACCCTATTATATGAAAAGAACAA
AAATAAATCTCGTAGAAGACAAGACTCCTATATATTTTTTCCAAACGTTT
TTAGTGCCAGTAGTTATTCTTCCTACAACATACTCCTCTGTTCTACCATC
CCACTCTTTTACACTTTAACCTGCCTCCCCATTACTTCTTACTAGCACTA
TATCAAAACAAACATCTGGTTCTCAAAAATAGAAGCATGCATGCACTTAT
ATAAATGATAATTATATATTTTATGGATATTTTGTATTACAGCAAACAGT
GAACAAATAATAAAATGTAGCATAATTTTCATTTGTGTCTAGAAAGATGA
CTAAACAGTAAAGTTTGTACTACTCTTGCAGAAGAACAGCTCTAATGTCT
TTGTCTCTGAGGGCAAGTACATTGGCATGCACATACCATCAAAATTACAA
ATAGTAAAAATAAATCTTTACAACACTTACACATCTTATTAATCATGAGA
AGTTGATCTGGTGTCTACCTTTGATGACTAGTGTTCATGGTACTGGAAGG
GATTCTGCGTACTACCAGAAGAGGAGGGTAAATACCAATCCAGTGCAGAC
AGCTATAACAGGTTCCAAGAAGAACTCTCAATTCTGAACATCTATGCTCC
AAATACAAGGTCACCCACACTCATAAAAGAAACTTTAATAAAACTAAAAG
CACACATTGCACCTAACACAATAATTGTGGGGGGAGTTCTATACCCCACG
CTCATCATTGGGCGGATTAAGAGGACACCAACTTATCCGAAAACCCGTGG
AACTTACACAAATTTAAAGGCCCATGGGGCCAATGGGCCCAATGGGGCCA
ATGGATTTTAAAAATAATAATAAAACATTTTTTCCTTATTCAAAAAAAAA
AACTTTTTTTACCCCCTTTGGGACACTCTCTTTAATTTTCTAAAAACACC
CCAAACAAACTCCCCAAAATTAAAAATGGAAAAACCCTGGCCCCTTTGAA
TCCCCCAATTAGGGGTTTTCTCTCCCCAAATCAAAAGTCTCCTCATGGAG
CGAAACGCTTTCTAGTAATTGTCTGGGATGGAAAAATAATTTTTATATTG
TAGATNGAATCTCTTTACCTACGGTAAAACTCTTATATAAAAGAACACGG
ACTTTTCTTTGATACTCGCTNGCNGNNNCNNNNNTNATCTACTCCATG

NNNCCTATTTTTTNNNNTTGAGTGAGGCXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXCTCTATCTTATTACAAGTTCCA
AAGGTGACCTCCACTGAAACGTAAGTGGTTAATGATTGAATGAGGATACA
AAGATGTCTTCCCTAGTGCTATGGATTTTTCAGTCTAGGCACTTGTTATA
GATAAAATAATAAAGGTCACAAATTGGCATTAAGTCCTCAGATGGTGGTA
ACATTTTGGGAAATTCTAGAAAGTAGGATATATGACCTAACTAGAGGTAA
TTGGTCACCGGGGTAAACCTCTTGAGATATCTTGTCTCTAGCTCATTTCT
TGTCTTTCTTCTTTCTGTCCATCATGGAAATGAAAAAAGATGTTGGCTAG
ACATTCCTGTATTCAGGATGTTCTCCACTTGCTCTGTTCAAGAGTATGGA
ATTAAACAATCCTCTGAAATGATTAAAGAAAGTTCAATCCTTCCTTCCTT
ATGCTGATTTCACCAGAAAATATTATCACAGTAAAGAAAGCTTGACATTA
ACAATACAGAACTGATGACATAGATTTAATTACTCAGAGAAATTCAAACA
ATATATTTATGAACTAGGTCATAAAATGTATTTGTACACAGCAAGGAAAA
TTTCAGGTGATCTATATAAATGCTAGCTTCACTTATTTAGTTGTTTTTCA
GATCTACTCCTAAACTCTAAAGGATTCATGGAGTATACCCCACAGCTAGT
TCTTGCTTCCAATTAATTATAAATCTGGTTTGGTTTTGTTCTCTCACAAG
AAAAAAAATTAATTTGTTTTTTGTTTGCCAAAAATCACCTTTTCAAAATT
GAAAAGACCCTTTTTGATATCACCCTTTTTTTAACTGGCAATTAATCCAA
AAAATTTGGAAAGAACAACCAAACCCCTTTCTACTAATTTTATATATAAT
AGAAATTCCACAAACCTCCTTTCTCGTTTTCCGATTTATATAGAAACACA
TCAAATTCCTTTTTTCATTTAACTATCAAAAACNTATTTTTTCCTTATTT
TCCTTNACTCATCAATTCTATACCTCCACTTTTTACCTCTCTTTTCCTCT
ACTCCCTTTATTATATTCTTTTCTCTAATTTTTCATTANTACACTTAATA
CCTTTCTNCTTTCTATCTCCCTTTTCCCTTTNACTTACTCATTACTTTTC
TACATATTNTCAAACATCATAAAATAATTATTTTACTCTTTTATATCCNC
ATNTTNNTAATTAANNATCCTTCGAATTGTTATTTTTGATGAT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no304_a18.b1 MSMg01no304_a18.b1 CHROMAT_FILE:
MSMg01no304_a18.b1 PHD_FILE: MSMg01no304_a18.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:42:10 2005
         (760 letters)



>mm_chr12_44782976_44784135
          Length = 1160

 Score = 1311 bits (678), Expect = 0.0
 Identities = 678/678 (100%)
 Strand = Plus / Minus

                                                                        
Query: 83   atccatcccatatacattaagtatttttatttagttacttctggcttttgggaaaagcat 142
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1147 atccatcccatatacattaagtatttttatttagttacttctggcttttgggaaaagcat 1088

                                                                        
Query: 143  tatctcttttgcaggataattccaactaaccctattatatgaaaagaacaaaaataaatc 202
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1087 tatctcttttgcaggataattccaactaaccctattatatgaaaagaacaaaaataaatc 1028

                                                                        
Query: 203  tcgtagaagacaagactcctatatattttttccaaacgtttttagtgccagtagttattc 262
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1027 tcgtagaagacaagactcctatatattttttccaaacgtttttagtgccagtagttattc 968

                                                                        
Query: 263  ttcctacaacatactcctctgttctaccatcccactcttttacactttaacctgcctccc 322
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 967  ttcctacaacatactcctctgttctaccatcccactcttttacactttaacctgcctccc 908

                                                                        
Query: 323  cattacttcttactagcactatatcaaaacaaacatctggttctcaaaaatagaagcatg 382
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 907  cattacttcttactagcactatatcaaaacaaacatctggttctcaaaaatagaagcatg 848

                                                                        
Query: 383  catgcacttatataaatgataattatatattttatggatattttgtattacagcaaacag 442
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 847  catgcacttatataaatgataattatatattttatggatattttgtattacagcaaacag 788

                                                                        
Query: 443  tgaacaaataataaaatgtagcataattttcatttgtgtctagaaagatgactaaacagt 502
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 787  tgaacaaataataaaatgtagcataattttcatttgtgtctagaaagatgactaaacagt 728

                                                                        
Query: 503  aaagtttgtactactcttgcagaagaacagctctaatgtctttgtctctgagggcaagta 562
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 727  aaagtttgtactactcttgcagaagaacagctctaatgtctttgtctctgagggcaagta 668

                                                                        
Query: 563  cattggcatgcacataccatcaaaattacaaatagtaaaaataaatctttacaacactta 622
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 667  cattggcatgcacataccatcaaaattacaaatagtaaaaataaatctttacaacactta 608

                                                                        
Query: 623  cacatcttattaatcatgagaagttgatctggtgtctacctttgatgactagtgttcatg 682
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 607  cacatcttattaatcatgagaagttgatctggtgtctacctttgatgactagtgttcatg 548

                                                                        
Query: 683  gtactggaagggattctgcgtactaccagaagaggagggtaaataccaatccagtgcaga 742
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 547  gtactggaagggattctgcgtactaccagaagaggagggtaaataccaatccagtgcaga 488

                              
Query: 743  cagctataacaggttcca 760
            ||||||||||||||||||
Sbjct: 487  cagctataacaggttcca 470


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 35
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 760
Length of database: 1160
Length adjustment: 10
Effective length of query: 750
Effective length of database: 1150
Effective search space:   862500
Effective search space used:   862500
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)

Query= MSMg01no304_a18.g1 MSMg01no304_a18.g1 CHROMAT_FILE:
MSMg01no304_a18.g1 PHD_FILE: MSMg01no304_a18.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:42:10 2005
         (509 letters)



>mm_chr12_44734658_44735566
          Length = 909

 Score =  938 bits (485), Expect = 0.0
 Identities = 500/505 (99%)
 Strand = Plus / Plus

                                                                       
Query: 5   atcttattacaagttccaaaggtgacctccactgaaacgtaagtggttaatgattgaatg 64
           ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 205 atcttattacaagttccaaaggtgacctccactgaaaagtaagtggttaatgattgaatg 264

                                                                       
Query: 65  aggatacaaagatgtcttccctagtgctatggatttttcagtctaggcacttgttataga 124
           |||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||
Sbjct: 265 aggatacaaagatgtcttccttaatgctatggatttttcagtctaggcacttgttataga 324

                                                                       
Query: 125 taaaataataaaggtcacaaattggcattaagtcctcagatggtggtaacattttgggaa 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 taaaataataaaggtcacaaattggcattaagtcctcagatggtggtaacattttgggaa 384

                                                                       
Query: 185 attctagaaagtaggatatatgacctaactagaggtaattggtcaccggggtaaacctct 244
           ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 385 attctagaaagtaggatatatgacctaactagaggtaattggtcaccagggtaaacctct 444

                                                                       
Query: 245 tgagatatcttgtctctagctcatttcttgtctttcttctttctgtccatcatggaaatg 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 tgagatatcttgtctctagctcatttcttgtctttcttctttctgtccatcatggaaatg 504

                                                                       
Query: 305 aaaaaagatgttggctagacattcctgtattcaggatgttctccacttgctctgttcaag 364
           |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 505 aaaaaagatgttggctagacattcctgtattcaggatgttctgcacttgctctgttcaag 564

                                                                       
Query: 365 agtatggaattaaacaatcctctgaaatgattaaagaaagttcaatccttccttccttat 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 agtatggaattaaacaatcctctgaaatgattaaagaaagttcaatccttccttccttat 624

                                                                       
Query: 425 gctgatttcaccagaaaatattatcacagtaaagaaagcttgacattaacaatacagaac 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 gctgatttcaccagaaaatattatcacagtaaagaaagcttgacattaacaatacagaac 684

                                    
Query: 485 tgatgacatagatttaattactcag 509
           |||||||||||||||||||||||||
Sbjct: 685 tgatgacatagatttaattactcag 709


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 509
Length of database: 909
Length adjustment: 10
Effective length of query: 499
Effective length of database: 899
Effective search space:   448601
Effective search space used:   448601
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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