BAC Information

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BAC

Clone NameMSMg01-304F14
Chromosome12 (Build37)
Map Location 47,293,557 - 47,294,292
singlet/doubletsinglet
Overlap genenone
Upstream genenone
Downstream geneLOC664952, Nova1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-304F14.T7 (MSMg01no304_f14.b1)MSMg01-304F14.TJ (MSMg01no304_f14.g1)
ACCAG429660AG429661
length1,3301,330
length of high quality
(start - end)		737 (140 - 876)772 (135 - 906)
definitionCHROMAT_FILE: MSMg01no304_f14.b1 PHD_FILE: MSMg01no304_f14.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:42:52 2005CHROMAT_FILE: MSMg01no304_f14.g1 PHD_FILE: MSMg01no304_f14.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:42:52 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NNNNCCCAATTCCNNNNNNNNGCAGTGGGCGCTATAGACTCCTATAGGGA
GAGGATCCGCGGAATTCTCTGAAGAAAAGNTATACATGTAAGTTGACATT
TGAAAAAGTTACAGTATACTCAATCCCCTGAAACACTCAGTTTTTCTTAC
AGTAGCTGAGTATCTGAGAAATTTCAGCTAAGGGAAAAAAAATCACAAAC
ATTGACTTATGTAGCTCTTGACAGATGCATTAATAGATAAAAACAAACAA
AGGGCATAATGTATTTTTATGAAAATTGAGGGAATTTTAAAAATAGCACC
TCAGATAATTCTATGTCACTTAGGAGAGACTGTCCTTGGGCTTTTTCTTG
GAGTGCCTTCCTCTTTCCTTTTTTCTTAGCCACCTACTCTATAAGATTAT
GACAAGGAGTATTAAATTTAAATTTCTAGTAACTTTACAAACTACAAGCC
CTATGCACTTCATTGTATTTATCAACTTGCACATAACTAGAACAATTTCT
ATTTTCTAGAGAGATTTATTCATACTTGTTTCTTATAAAAAAAAAAACTC
TCAAGGAGTAGAGTCATTCAGTATTATTAGTGTTTCCACCCAATCAACTA
AGGCAGCTAAGGCAATTATTCACATAAAGAATCAATGCAGCTTGAGGAGG
CATGCATTTATGTTCACACTGCCTTGCTAGGTTTCACTATGCCTCCTTCT
TTGCAATTCATTTTTTTTTCATCAAATCTAATCACTATTGCTTTCTGTCA
TAGGTATTAAATTCACTTAGTCCTACTACTGCATTTTCAAATATATATTT
TTTATTTATGGGAAATATGAAATAGCTTAAGTGAGTAAGAAACACTGACC
TTAGTACCAGAGGAACTATATAGCTATTTTTTCCCCTAAGGTACATATAA
ACATGCACATATATACATTCCCATATTTTACATATTATATACCTAAAGAT
GTATACTCTTTGATACACACATACAATGCTTTGGTCAAACTTCCAAAAAT
TTTGAGAAAGAATGATAACATCTTTCCTGGGAGTGCAAATCAAAAAAAAA
AAATGGTATTTTTTCCCGGAGACTCTTTTTGTGGTTTTGGGAAATCTGCC
AAAACCCTTTCCCTTTTTTTTTTGAAAACCCAGGAAAGGAAAGGGAAAAA
TTTTAAATATTTTTTTGAAGTCTTNAATANAACCCCGAAAATTTCAAATT
TTGAGGGCCTCACTAAAAAATTTTCAACTCTGTGGAACCAGGAAAAAAAA
AAAAGGCCGTGGTAACCCTTTCCGGTTTCCTTACCATTCTGCCGGAGATC
TTCTCGAAAAAAAGGCCGATTTCTTTCAAT

NNCCCAATTTNNNNNNNACAGAAXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCTTTTAAACTGAGGAATACC
GAATGGCAGAGAAGCACCTGAACATATGTTCACCATCCTTAATCATCAGG
GAAATGCAAATCAAAACAACCCTGAGATTCCACCTCACACCAATCAGAAT
GGCTAAGATAAAAAATTCAGGTGACAGCAGATGCTGGCCAGGATGTGGAG
ATAGAGGAACATTCTTCCATTGTTGGTGGGATTGCAAGCTTGTACACTCT
GGAAATCAGTCTGGCGGTTCCTCAGAAAATTGAACATAGTACTACCGGAT
GATCCCGCAATACCTCTCCTGGGCATATATCCAGAAGATGTCCCAACCAG
TAAGAAGGACACATGCTCCACTATGTTCATAGCAGCCTTATTTATAATAG
CCAGAAGTTGGAAAGAACCCAGATGCCCCTCAACAGAGGAATGGATACAG
AAAATGTGGTACATTTACACAATGGAGTACTACTCAGCTATTAAAAAGAA
TGAATTTATGAAATTCCTAGGCAAATGAATGGACCTGGAGGGCATCATCC
TGAGTGAGGTAACCCAATCACAAAGGAACTCGCACAATATGTACTCACTG
ATAAGTGGATATTAGCCCAAAACCTAGGATACCCAAGATATAAGATACAA
TTTGCTAAATGCATGAAATTCAAGAAGAACGAAGACCAAAGTGTGGACAC
TTTGCCCCTTCCTAGAAATGGGAACAAAACACCCATGAAAGGAGTTACAG
AGACAAAATTTGGAGCTGTGACAAAAGGATGGAACATCTAGTGATTGCCA
TATCCAGGGATCCATCCCATAATCAGCTTCCAAACGCTGACACCATTGCA
CACACTAGCAAGATTTTGCTGAAAGGACCCAGATATAGCTGTCTCTTGTG
AGAATATGCCGGGGCCTAGCAAACACAGAATTGGATGCTCACAGCCACCT
ATTGGATGAATCACAGGGCCCCCAGGGAGGAACTAAAAAAATACCCCAGA
GCTAAAGGAAACTCCACCCCTTTGTGGAAAACATTTTTGAATAACCGAAC
CCGGAGCCCTTGTTTCTACTGATATTGTTAAAAAAAGGCCATTCTCCCCC
CCTGGAAAAAAACCCCTGCATTGTAATTTTTATTCCCCCCACGGGAGGCC
TGCCAAACAGGAAGGGTGGGGTGGGATATCCCCCCCCCTTTTCTTAGAAT
TAATAATTATTCTACGCTTCTACATCATATATCTTATCTTCCTTATATCT
ATTCAATACTCTTTAGATACGATACCACAT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no304_f14.b1 MSMg01no304_f14.b1 CHROMAT_FILE:
MSMg01no304_f14.b1 PHD_FILE: MSMg01no304_f14.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:42:52 2005
         (737 letters)



>mm_chr12_47293357_47294492
          Length = 1136

 Score = 1365 bits (706), Expect = 0.0
 Identities = 730/738 (98%), Gaps = 3/738 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   gtttttcttacagtagctgagtatctgagaaatttcagctaagggaaaaaaaatcacaaa 60
           |||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 201 gtttttcttacattagctgagtatctgagaaatttcagctaaggg-aaaaaaatcacaaa 259

                                                                       
Query: 61  cattgacttatgtagctcttgacagatgcattaatagataaaaacaaacaaagggcataa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 260 cattgacttatgtagctcttgacagatgcattaatagataaaaacaaacaaagggcataa 319

                                                                       
Query: 121 tgtatttttatgaaaattgagggaattttaaaaatagcacctcagataattctatgtcac 180
           ||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||
Sbjct: 320 tgtatttttatgaaaattgagtgaattttaaaaatagcacatcagataattctatgtcac 379

                                                                       
Query: 181 ttaggagagactgtccttgggctttttcttggagtgccttcctctttccttttttcttag 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 380 ttaggagagactgtccttgggctttttcttggagtgccttcctctttccttttttcttag 439

                                                                       
Query: 241 ccacctactctataagattatgacaaggagtattaaatttaaatttctagtaactttaca 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 440 ccacctactctataagattatgacaaggagtattaaatttaaatttctagtaactttaca 499

                                                                       
Query: 301 aactacaagccctatgcacttcattgtatttatcaacttgcacataactagaacaatttc 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 500 aactacaagccctatgcacttcattgtatttatcaacttgcacataactagaacaatttc 559

                                                                       
Query: 361 tattttctagagagatttattcatacttgtttcttataaaaaaaaaaactctcaaggagt 420
           ||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||
Sbjct: 560 tattttctagagagatttattcatacttgcttcttataaaaaaaaaa-ctctcaaggagt 618

                                                                       
Query: 421 agagtcattcagtattattagtgtttccacccaatcaactaaggcagctaaggcaattat 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 619 agagtcattcagtattattagtgtttccacccaatcaactaaggcagctaaggcaattat 678

                                                                       
Query: 481 tcacataaagaatcaatgcagcttgaggaggcatgcatttatgttcacactgccttgcta 540
           |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 679 tcacataaagaatcaatgcagcctgaggaggcatgcatttatgttcacactgccttgcta 738

                                                                       
Query: 541 ggtttcactatgcctccttctttgcaattcattttt-ttttcatcaaatctaatcactat 599
           |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 739 ggtttcactatgcctccttctttgcaattcatttttcttttcatcaaatctaatcactat 798

                                                                       
Query: 600 tgctttctgtcataggtattaaattcacttagtcctactactgcattttcaaatatatat 659
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 799 tgctttctgtcataggtattaaattcacttagtcctactactgcattttcaaatatatat 858

                                                                       
Query: 660 tttttatttatgggaaatatgaaatagcttaagtgagtaagaaacactgaccttagtacc 719
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 859 tttttatttatgggaaatatgaaatagcttaagtgagtaagaaacactgaccttagtacc 918

                             
Query: 720 agaggaactatatagcta 737
           ||||||||||||||||||
Sbjct: 919 agaggaactatatagcta 936


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 737
Length of database: 1136
Length adjustment: 10
Effective length of query: 727
Effective length of database: 1126
Effective search space:   818602
Effective search space used:   818602
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)


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