Query= MSMg01no304_p21.b1 MSMg01no304_p21.b1 CHROMAT_FILE:
MSMg01no304_p21.b1 PHD_FILE: MSMg01no304_p21.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:44:22 2005
(699 letters)
>mm_chr12_100801895_100802994
Length = 1100
Score = 1299 bits (672), Expect = 0.0
Identities = 693/700 (99%), Gaps = 1/700 (0%)
Strand = Plus / Plus
Query: 1 cccggcggaaagcacaagcgtggccgggacgtttgctccgtgcacctgtggtatagagtg 60
||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||
Sbjct: 201 cccggcggaaagcacaagcgtggccgggagggttgctccgtgcacctgtggtatagagtg 260
Query: 61 cgctcacagaaggtaagagacatcgcgggatcctcagagatttcagaatatcggggagaa 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 cgctcacagaaggtaagagacatcgcgggatcctcagagatttcagaatatcggggagaa 320
Query: 121 aaaaagtggacaatttgtgcgcttgaaaccagttttcccccaatttgtccccgttagaag 180
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 321 aaaaagtggacaatttgtgcgcttgaaaccagtttccccccaatttgtccccgttagaag 380
Query: 181 ttttttgggtttttttttt-ccattttgctttctctagctttataatttgtgttttaaat 239
|||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ttttttggttttttttttttccattttgctttctctagctttataatttgtgttttaaat 440
Query: 240 aacaaagccccatatggctcaccacgtagtcatctgattttcaaaagacctctaaaatta 299
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 aacaaagccccatatggctcaccacgtagtcatctgattttcaaaagacctctaaaatta 500
Query: 300 catcaaaatacgcacccatgtatctcctaagaaatcaactagagagaattaatggtggca 359
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 catcaaaatatgcacccatgtatctcctaagaaatcaactagagagaattaatggtggca 560
Query: 360 tatggtgtgcctcgtagagaaaacttaattacaaattaaaacaaatgcgaaaattcccaa 419
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 tatggtgtgcctcgtagagaaaacttaattacaaattaaaacaaatgcgaaaattcccaa 620
Query: 420 atcccataaaccaaaagtaaattatgatcctggattgattcacaaatcagctcgtgcgcc 479
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 atcccataaaccaaaagtaaattatgatcctggattgattcacaaatcagctcgtgcgcc 680
Query: 480 attagaaggactgtaaaaattctacgtttctttctgaacaagtgtgttaccttgcaagag 539
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 attagaaggactgtaaaaattctacgtttctttctgaacaagtgtgttaccttgcaagag 740
Query: 540 ttcactaaaccaatggctcccagcccctcccccatcccacccatactcaaccccacctcc 599
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 ttcactaaaccaatggctcccagcccctcccccatcccacccatactcaaccccacctcc 800
Query: 600 accccatcttccaccctcctggctctctactgtggcctaactggaatctcgaaggttctc 659
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 801 accccatcttccaccctcctggctctctactgtggcctaactggaatctcgcaggttctc 860
Query: 660 ctttaagaagacaattccattagcccctaattcatgataa 699
||||||||||||||||||||||||||||||||||||||||
Sbjct: 861 ctttaagaagacaattccattagcccctaattcatgataa 900
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 699
Length of database: 1100
Length adjustment: 10
Effective length of query: 689
Effective length of database: 1090
Effective search space: 751010
Effective search space used: 751010
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no304_p21.g1 MSMg01no304_p21.g1 CHROMAT_FILE:
MSMg01no304_p21.g1 PHD_FILE: MSMg01no304_p21.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:44:22 2005
(739 letters)
>mm_chr12_100886527_100887665
Length = 1139
Score = 1336 bits (691), Expect = 0.0
Identities = 723/737 (98%), Gaps = 7/737 (0%)
Strand = Plus / Minus
Query: 10 gaatctgggaaattacatttcagttgccaatttggactcttgtttgcaaaggtacctgga 69
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1139 gaatctgggaaattacatttcagttgccaatttggactcttgtttgcaaaggtacctgga 1080
Query: 70 cctgtgaatggagtgtatcttgtacaaaatctatttgcctggcttgactcaaagtctcct 129
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1079 cctgtgaatggagtgtatcttgtacaaaatctatttgcctggcttgactcaaagtctcct 1020
Query: 130 gagcctttcatttcccctgtgatggggggaatttgacaggtatgatcctagccctgttct 189
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1019 gagcctttcatttcccctgtgatggggggaatttgacaggtatgatcctagccctgttct 960
Query: 190 gagcacagtgaacaaatgaaaacccatgatttcaggcctctggcttggggtggagaagct 249
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 959 gagcacagtgaacaaatgaaaacccatgatttcaggcctctggcttggggtggagaagct 900
Query: 250 gggaacacacacacacacacacacacacacacacatacacacacacacacaca------c 303
||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
Sbjct: 899 gggaacacacacacacacacacacacacacacacacacacacacacacacacactacacc 840
Query: 304 aca-cacaccacaccacaccacaccacaccacaagcagcaagaacagcaaggtatgtcag 362
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 839 acaccacaccacaccacaccacaccacaccacaagcagcaagaacagcaaggtatgtcag 780
Query: 363 gagaggtgaatgaaccatctggagtccagtagcttatgacctgagatggcaaggcatggt 422
||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 779 gagaggtgaataaactatctggagtccagtagcttatgacctgagatggcaaggcatggt 720
Query: 423 ttccttggcttggctgccaaaggaaatctgtcagaagggattggagggtcacggtgcaaa 482
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 719 ttccttggcttggctgccaaaggaaatctgtcagaagggattggagggtcacggtgcaga 660
Query: 483 agtgttcttgacctactataccaagaatgcaggcccttagacagatggctgaaacctcct 542
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 659 agtgttcttgacctactataccaagaatgcaggcccttagacagatggctgaaacctcct 600
Query: 543 ggtgacaaggttggcagtatcagtgcttgggaggagcacgaaggatgacatttaaattgc 602
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 599 ggtgacaaggttggcagtatcagtgcttgggaggagcacgaaggatgacatttaaattgc 540
Query: 603 aatctctgggggccagagagacagctcaaaggttaagaacacatactgctcttgcagggg 662
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 539 aatctctgggggccagagagacagctcaaaggttaagaacacatactgctcttgcagggg 480
Query: 663 accagagtttgagtcccagctcccgtactcaacagctaagaaccatattcaacgtcagct 722
|||||||||||||||||||||||| | |||||||||||| ||||||||||||||||||||
Sbjct: 479 accagagtttgagtcccagctcccctgctcaacagctaataaccatattcaacgtcagct 420
Query: 723 ccaggggaaactgatgc 739
|||||||||||||||||
Sbjct: 419 ccaggggaaactgatgc 403
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 76
Number of extensions: 16
Number of successful extensions: 16
Number of sequences better than 10.0: 1
Number of HSP's gapped: 6
Number of HSP's successfully gapped: 1
Length of query: 739
Length of database: 1139
Length adjustment: 10
Effective length of query: 729
Effective length of database: 1129
Effective search space: 823041
Effective search space used: 823041
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)
|
