BAC Information

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BAC

Clone NameMSMg01-305C22
Chromosome12 (Build37)
Map Location 11,433,748 - 11,434,097
singlet/doubletsinglet
Overlap geneVsnl1
Upstream geneLOC238074, LOC100042308, EG668435, Kcns3, LOC628276, Msgn1, 5830483C08Rik, Smc6
Downstream geneEG209550, LOC217390, LOC628327, LOC627110, LOC100043209, D12Ertd553e
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-305C22.T7 (MSMg01no305_c22.b1)MSMg01-305C22.TJ (MSMg01no305_c22.g1)
ACCAG430237AG430238
length1,2151,227
length of high quality
(start - end)
423 (31 - 453)358 (101 - 458)
definitionCHROMAT_FILE: MSMg01no305_c22.b1 PHD_FILE: MSMg01no305_c22.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:44:47 2005CHROMAT_FILE: MSMg01no305_c22.g1 PHD_FILE: MSMg01no305_c22.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:44:47 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NNCCCAGCATTCGCGCTATAGACTCACTAAGGGAGAGGATCCGCGGAATT
CCACACCCCTAAGCCCCTTACCCCATAAAACCCCCTAGCTTTCGAGCCTC
GTGGCCAACATCCGTTATCTCCTGTGTGGGATGCATGTTGGTCCAGAGCT
CCGTCATTAAAGGACCTCATGTAATTACATCAAGATTGTCCTTCGTGATT
TTTTGGGTACACGCCGAATCGGGAATTGAGTGGGGTTTTCCCCACTAGGT
TCTATCAGCATATGTAGCAGAAGATGGCCTAGACGGCCATTATTGGGAAA
AGAGGCCCCTTGGTCTTACAAACTTTATATGTATGCCCCAGTACAGGGGA
ACACCAGGGCCAAGAAGTGGGAGTGGGTGGGTAGGGAAGCAGGGCATGTT
TTGGGTATAAGGAACTTTCAGGATAGCATTTGAAGTGTAACTAAAGAAAA
TATTTTTTTCCCCCCCCCCCAAAAAATCACGCTTCCATAAAAAAGAAGGG
AGGTTCTACNTTGGTACACCCCTTGTTTTTAAGAAGGATGAAACTTAAGT
TCCAACTGCTATTTTGATAACCTCTTTTTTCTGGGAACTGATTCAATTAC
TTTTTCATTTAAAAAAAATCCATTGTTCAAGTTCTGTTGAAGTCATGGCA
AAGCTTTTCATTTTAAGAAAAAAAATGCTACTTAGTAAATTAACTATTCC
ATCAAATACTACATCAGTCAACTGCTGCTAGCCTATTTCTACAGTAGGGT
TTAGAAGGGAATTATCTTGTTACATTCCAAAACTGCAAGTAATACTTCTT
CCTATTTAGTACCTATCAGCCTAAAACAAAACAATGTGACAAAAGAGCAA
CTATGGTCTTATGTTAAAGAAAAGAAATGGCTACTTCAGAATGATCCCAG
AACTGTTTTTACATTTCTCTTAAACCTCACACTGATGTCCAGAAACTTAC
TATTTAAAATGTGAAAAAGACATCTTGATTTTAGAAAATAGTGTTACTAT
ATAGAATTCTTACCACCCCAAAGTATTTCCTAAACCCTTTTTTTTCTCTT
GGAAAAACTTGTTGCTATCCTCCCACTCAGGATCTAAAGAATAATTCCCA
TCCGGGGGGAATTATCTTTTTTTTCTTCCCAAACCATACAATAATTTTTA
TACTCCTTATTTCCGGGGGGTGCCATCCCTAGAAGTTCTTTCTCCCTTTC
TAGAGGGGTTCTCTA
NNNTTCGATGACGCGTAGCTGGXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXATGACAGTACCTGGCATATGCGCGTT
ACCTATAATTCTCCTCCCAGCCTGGTTCAGTAGGACAGACATACTTGGAA
AAAAATACAGCAGAATACACCTATGCTACAGTGGAAGAAATAATGACGTA
CAGACTGAGAAGGTGAGCAGGAAGGAGAGGGAAGGGCCCAAAGAAAGTCT
GCATGGGGAGAGATTGTTTATGAGATGCTAAACTATTTCATTTGCTATAT
GTACATTTGTAGGATTGACCTTAGCACTCTTATAAGGTAATATGAAATTA
TTTTTTTTTACAACTAAGAAAATCAGCACAAAAGATTGAAACCAAATATC
CCATTTTTTTTTCACCTTGAACTCCTTGTATGGAGTCCTCAAAATGGAGG
ACCGATTTTTTTTTTCCCCCCCCCCCAAGANGNNTCTTATCCCTCCAAAA
AAGAGGGGGGTTANNTTCCCCNGTANNTAGAGGAAGAACTAGAAGAAAAG
GAACACAGCTCTTAGAACTGTTAAAAACAGCAAGGTTATGGTATGTGTGT
CTAGAAAAATATGCAAATAAGTTTTGGTTTAATAGGAAAAAGCTGCTCGG
ATTTTCTTTTAAACTGTAAAAGCCCTGAGAGAAAAGAATGAAAGAGTAGA
ATCTAAAAGTCTCCTCCCACAGATTCGGGTGGAAAGATTAGTCATGGGGT
GAGTTGGAGTAATGGGGTGGGTGTGAGGAGGTTTTTTTTNTNNNNNNNNN
NNTTTTTNTTTTTTTTTTTTTTTTTTTTTTTTTTNTTTTNTTTTTTTTNN
TTTTTTTTTTTTTTTTTTTTTTTTTTTNNTTNNNTNNNNTTTTTNNTTTT
TTNTTTTTTTTTTTTNNTTTTTTTNTTTTNTTNTTTTTTTTTTTTNTTTT
TTTTNNTTTNTTTTNTTTTTTTTTTTTTTTTTTTTTTTTTTTNTTTTTAA
TNTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
TTTNNTTTTTNTTTTTTTNTTTTTTTTTNTTTTTNTTTTTTTTTNNTTTT
TTTTTNNTTTTTTTTTTTTTTTTTTTTTTTTNTTTNTTTTTTTTTTTTTT
TTNTTTTTNTTTTTTTTTTTTTTTNTTTTTTTTTAANTTTTTTNTTGTTT
TTTTTTNTTTTTTTTTTTNTTTGTTTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no305_c22.g1 MSMg01no305_c22.g1 CHROMAT_FILE:
MSMg01no305_c22.g1 PHD_FILE: MSMg01no305_c22.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:44:47 2005
         (358 letters)



>mm_chr12_11433548_11434302
          Length = 755

 Score =  621 bits (321), Expect = 0.0
 Identities = 344/353 (97%), Gaps = 3/353 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   acctataattctcctcccagcctggttcagtaggacagacatacttggaaaaaaatacag 60
           ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 201 acctataattctcctcccagcctggttcagtaggacagacatacttgaaaaaaaatacag 260

                                                                       
Query: 61  cagaatacacctatgctacagtggaagaaataatgacgtacagactgagaaggtgagcag 120
           |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 261 cagaatacacctatgctacagtggaagaaataatgatgtacagactgagaaggtgagcag 320

                                                                       
Query: 121 gaaggagagggaagggcccaaagaaagtctgcatggggagagattgtttatgagatgcta 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gaaggagagggaagggcccaaagaaagtctgcatggggagagattgtttatgagatgcta 380

                                                                       
Query: 181 aactatttcatttgctatatgtacatttgtaggattgaccttagcactcttataaggtaa 240
           ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aactacttcatttgctatatgtacatttgtaggattgaccttagcactcttataaggtaa 440

                                                                       
Query: 241 tatgaaattatttttttttacaactaagaaaatcagcacaaaagattgaaaccaaatatc 300
           ||||||||||||||||   |||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tatgaaattatttttt---acaactaagaaaatcagcacaaaagattgaaaccaaatatc 497

                                                                
Query: 301 ccatttttttttcaccttgaactccttgtatggagtcctcaaaatggaggacc 353
           ||| ||| | |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 498 ccactttatattcaccttgaactccttgtatggagtcctcaaaatggaggacc 550


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 358
Length of database: 755
Length adjustment: 9
Effective length of query: 349
Effective length of database: 746
Effective search space:   260354
Effective search space used:   260354
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)