BAC Information

Click to search

BAC

Clone NameMSMg01-305E16
Chromosome12 (Build37)
Map Location 41,518,213 - 41,518,587
singlet/doubletsinglet
Overlap geneDock4
Upstream geneLOC100043148, Arl4a, LOC100043606, Scin, Gm889, Ifrd1, EG629820, Zfp277
Downstream geneLOC638487, LOC100043157, LOC100043162, Lrrn3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-305E16.T7 (MSMg01no305_e16.b1)MSMg01-305E16.TJ (MSMg01no305_e16.g1)
ACCAG430311AG430312
length1,2701,291
length of high quality
(start - end)
404 (43 - 446)413 (73 - 485)
definitionCHROMAT_FILE: MSMg01no305_e16.b1 PHD_FILE: MSMg01no305_e16.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:45:02 2005CHROMAT_FILE: MSMg01no305_e16.g1 PHD_FILE: MSMg01no305_e16.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:45:02 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NNCCCCGCATTGGGCCTATAXXXXXXXXXXXXXXXXXXXXXXCGCGGAAT
TCCTGATCTTTCCAAACTTTTATCATGAATGGGTGTTGGATCTTGTCAAA
TGCTTTTTCTGCATCTAACGAGATGATCATGTGGTTTTTGTCTTTGAGTT
TGTTTATATAATGGATTACATTGATGGATTTTCGTATATTAAACCATCCC
TGCATCCCTGGAATAAAACCTACTTGGTCAGGATGGATGATTTCTTTAAT
GTGTTCTTGGATTCGGTTAGCGAGAATTTTATTAAGGATTTTTGCATCGA
TATTCATAAGAGAAATTGGTCTGAATTTCTCTATCTTTGTTGGATCTTTC
TGTGGTTTAGGTATCAGAGTAATAGTGGCTTCATAAAATGAGTTGGTTAT
TGTACCTTCTACTTCTATCTTGTGAAATAGTTTGTGCAGAACTGGAATTT
TTTTTTCTCCCCCCCCCNGANAGAACTCTCCACTAAAAAAAAAAAGGGGG
GGGCTTTTTTTGGTTGGGAGACTATTAATAACTGCTTCTATTTCTTTAGG
GGATATGGGACTGTTTAGAAGGTCAACTTGATCCTGATTCAACTTTGGTA
CCTGGTATCTGTCCAGAAATTTGTCCATTTCGTCCAGGTTTTCCAGTTTT
GTTGAGTATAAGCTTTTGTAGAAGGATCTGATGGTGTTTTGGATTTCTTC
AGGATCTGTTGTTATGTCTCCCTTTTCATTTCTGATTTTGTTGATTAGGA
TTTTGTCCCTTTGCCCTCTATTGAGTCTAGCTAAGGNTTTATCTATCTTG
TTGATTTTCTCAAAGAACCAACTCCTCGTTTGGTTAATTCTTTGAATAGT
TCTTCTTGTTTCCACTTGGTAATTTCACCCCCTGAGTTTGATAATTTCTT
GCCGTCTACTCCTCTTGGGGAAATTGCTTCCTTTTTTTTTAAAGCTTTTA
AAGGGGTTGTCAGTTGCTAAAAAGAGTTCTCCTCCCGTTCCTTCTGGAGG
AATCAAAACTATAATTTTCCCTCTTAAAAAGGCTTCCTTGGTGCCCCAAG
TTTGAGTACGTTGAGGTTTCTTTTTTTTTAACCCTTAAAAATCCTTAAAT
CCTTCCTTTTACCCATCCTGCACAAAGGATTATTGAAAAGAGGTGGGTAC
ATTCCTCCGGATGAGAGATATCCTCTATATTCTGTATACTAGAACAACCT
TTTACACGGCTTCACCTAATTACTTCACAACTTATATTTTTTTACTTACC
AACAATTTTTTATACATATA
NNNGGTGTGCAGTGTAGCTGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXATAAGATTAATAAATGCATGCTCTGTTT
CTTTAATGCCTCTTATCTACATTAGTAAGGGGCTGATAATTTGCAGTTTG
GATTGCTTTTATATAAATATGACTGTGAAATATAAGATGTACGTTGACAC
TAGAATCAAAGTAATAATTAAACCTCTATAATTATTTTATATTTTAAGGG
ACCAGATTTGTTCAATGGAAAATTTTATTCTTTTGTTTACTTTTAACATA
TTACTAGAATATTAAAAAATCATAATAATAAAAATAAAGTTTAAAAGGGC
TATAAATATTTTTCTTTAATGCTTTTATAGTCAGTATATTAGTAATAAAG
TTTTTTCAAAGTGACAATTAAGTAGCATTACTACCTTGTCTCAGGAAAGA
AAGTTTTTTTTCCCCCCCCCCCCAAGGAAACAATCCCCCTCCTAAAAAAA
GGGGGGCTAACAATCACAGTGGATTAGTGTAATCATGGTGAGCTGCTGCA
CACATTATGAATTAGGAAGGCATAGATTCTCATTTACTCTGAAATTCATG
CCTAAAACTTCATAAAATTAGTTGAGAAGATGGAAGCCTGGAAGACACTC
CCTGCTTCTGAATGCTGTGCTTGGCAAATCAGCCCTTAGATGGAGACTTT
GAGTCTCTGTGTCGTATGCTTGCCAAGAATCCCTCTCACTTTCCGTAACT
CCCCACAACGTCTTCATTTGTGCTCATTATCTCTGCTTTTTATAACAGTG
GGATTCCCTATTTTTGAAAACACTGCAACCGAGGCCGACAGACCACACTG
TGAGATACTCCAAATCAGGCCTCGGAGCTTATCCGCTGCATTACTGGCTC
CTCTTAACTTATGATCTGGCCTTTGTGCCAACTTTCCAGGCAGGCTTGGG
TTGAGAGAGGATACCCAGAGGTTCTAACACTGGGGAGGTGCAGCAGAGCT
GCCACTAACCTGAGGCACCCAATTGCCTTTGCAAAGAAAGGGGCATCCGT
CTCCATTCTCCCTCCCCAACTCCAATTAATCCCAAACCCTTAACAAGGGG
CAATGTTTCCTCCTGGTTGGATTTGGAAATTATTTCTAAACCCATGCCCC
AGAAATCCAACTTGGGTTGGGTTTCTCTAGAAGCCATATTTGTCCAAAAG
GGTTCCCCATTTTCCGGGTGAGACAAAAACACAATGTAAATAAATCCCTT
GCCCCCCCTTTTCTTTTGTAAAAAAACGACACTTCTCCCTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no305_e16.g1 MSMg01no305_e16.g1 CHROMAT_FILE:
MSMg01no305_e16.g1 PHD_FILE: MSMg01no305_e16.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:45:02 2005
         (413 letters)



>mm_chr12_41518013_41518825
          Length = 813

 Score =  636 bits (329), Expect = 0.0
 Identities = 366/387 (94%), Gaps = 17/387 (4%)
 Strand = Plus / Plus

                                                                       
Query: 1   ataagattaataaatgcatgctctgtttctttaatgcctcttatctacattagtaagggg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ataagattaataaatgcatgctctgtttctttaatgcctcttatctacattagtaagggg 260

                                                                       
Query: 61  ctgataatttgcagtttggattgcttttatataaatatgactgtgaaatataagatgtac 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ctgataatttgcagtttggattgcttttatataaatatgactgtgaaatataagatgtac 320

                                                                       
Query: 121 gttgacactagaatcaaagtaataattaaacctctataattattttatattttaagggac 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gttgacactagaatcaaagtaataattaaacctctataattattttatattttaagggac 380

                                                                       
Query: 181 cagatttgttcaatggaaaattttattcttttgtttacttttaacatattactagaatat 240
           |||||||||||||||||        |||||||||||||||||||||||||||||||| ||
Sbjct: 381 cagatttgttcaatgga--------ttcttttgtttacttttaacatattactagaacat 432

                                                                       
Query: 241 taaaaaa-tcataataataaaaataaagtttaaaagggctataaatatttttctttaatg 299
            |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 433 aaaaaaaatcataataataaaaataaagtttaaaagggctataaatatttttctttaatg 492

                                                                       
Query: 300 cttttatagtcagtatattagtaataaag----ttttttcaaagtgacaattaagtagca 355
           ||||||||||||| |||||||||||||||    ||    ||||||||||||||| |||||
Sbjct: 493 cttttatagtcagcatattagtaataaagcacatt----caaagtgacaattaaatagca 548

                                      
Query: 356 ttactaccttgtctcaggaaagaaagt 382
           |||||||||||||||||||||||||||
Sbjct: 549 ttactaccttgtctcaggaaagaaagt 575


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 413
Length of database: 813
Length adjustment: 9
Effective length of query: 404
Effective length of database: 804
Effective search space:   324816
Effective search space used:   324816
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)