Query= MSMg01no306_d15.b1 MSMg01no306_d15.b1 CHROMAT_FILE:
MSMg01no306_d15.b1 PHD_FILE: MSMg01no306_d15.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:46:56 2005
(228 letters)
>mm_chr12_96974366_96974993
Length = 628
Score = 426 bits (220), Expect = e-124
Identities = 226/228 (99%)
Strand = Plus / Plus
Query: 1 ctttcacatttccaaggctccatgcaggaactgcacactgagaacgtttagaagcaaggg 60
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ctttcacacttccaaggctccatgcaggaactgcacactgagaacgtttagaagcaaggg 260
Query: 61 taaagggccttgtatacaccttctacttagaaaaccacagccctagataactcccacttc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 taaagggccttgtatacaccttctacttagaaaaccacagccctagataactcccacttc 320
Query: 121 tggttgtcaggtgttaataacaagaaaagttgtgccttcacctattgcaatgagctatgc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tggttgtcaggtgttaataacaagaaaagttgtgccttcacctattgcaatgagctatgc 380
Query: 181 gaagcatcagagctaataggagctcagagcctaggatactgccaggca 228
||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 381 gaagcatcagagctaatagcagctcagagcctaggatactgccaggca 428
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 228
Length of database: 628
Length adjustment: 9
Effective length of query: 219
Effective length of database: 619
Effective search space: 135561
Effective search space used: 135561
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no306_d15.g1 MSMg01no306_d15.g1 CHROMAT_FILE:
MSMg01no306_d15.g1 PHD_FILE: MSMg01no306_d15.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:46:57 2005
(652 letters)
>mm_chr12_97128364_97129415
Length = 1052
Score = 1170 bits (605), Expect = 0.0
Identities = 640/657 (97%), Gaps = 10/657 (1%)
Strand = Plus / Minus
Query: 1 tccttctaaggaattcagtcttcatatccttgctttgcaggcaagcacattaagtgtctt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 852 tccttctaaggaattcagtcttcatatccttgctttgcaggcaagcacattaagtgtctt 793
Query: 61 gttgaagggtacgctgcaaccaataagtcacttaggaaattgatccaagaaattctcatt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 792 gttgaagggtacgctgcaaccaataagtcacttaggaaattgatccaagaaattctcatt 733
Query: 121 tccgatcctttgttccggtaccttagcaaaactgttttccaaagatagaaacatattgct 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 732 tccgatcctttgttccggtaccttagcaaaactgttttccaaagatagaaacatattgct 673
Query: 181 ctgaagctaaacagcaaattaaagacatgctgtctcatgtaatcttataaatatggttta 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 672 ctgaagctaaacagcaaattaaagacatgctgtctcatgtaatcttataaatatggttta 613
Query: 241 aaagccaccattttttt-----tgagagagttgccatctggttcccatggtcaaaaaaga 295
|||||||||| | ||||||||||||||||||||||||||||||||||||||
Sbjct: 612 aaagccacca-----gtacccctgagagagttgccatctggttcccatggtcaaaaaaga 558
Query: 296 aatgagccaagcatgggaggaaaacagccttctacagtctgggtaaatttctacattgct 355
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 557 aatgagccaagcatgggaggaaaacagccttctacagtctgggtaaatttctacattgct 498
Query: 356 taggcttccaaaaatcaaatttctagaacgtatttgggaaggtgaagctaactcttcctg 415
|||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||
Sbjct: 497 taggcttccaaaaatcaaatttctagaatgtctttgggaaggtgaagctaactcttcctg 438
Query: 416 agtcccttgtgaaaatgaccagatttgacccggagattataaaggtgggatattccttaa 475
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 437 agtcccttgtgaaaatgaccagatttgacccggagattataaaggtgggatattccttag 378
Query: 476 taaaacatgattagcagatcaagttttataagtgttgagtgttgagagtttccttcttgt 535
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 377 taaaacatgattagcagatcaagttttataagtgttgagtgttgagagtttccttcttgt 318
Query: 536 agtagcagatcttcagtatgtcagccagcactaagccttaattccatggccttgtgacat 595
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 317 agtagcagatcttcagtatgtcagccagcactaagccttaattccatggccttgtaacat 258
Query: 596 gcaaccccacatcaaatcaagactgattcataatagatattacaattatcacttcag 652
|||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||
Sbjct: 257 gcaaccccacatcaaatcaagactgactcataatagatattacaatcatcacttcag 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 34
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 652
Length of database: 1052
Length adjustment: 10
Effective length of query: 642
Effective length of database: 1042
Effective search space: 668964
Effective search space used: 668964
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
