NCATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCAAAGAGGATCC
GCGGAATTCTAAAGTTTCGTAAATCCATCACAGCGTAATCCTGAGGACCT
TTCAGTAGTGACACACTGATATTTGCAGCAGGCTTGGAAAAGGCATTTTG
GTTTCTATTTCTATCACACACAAAATGGTCTGTTCCTACGTTAGCTCTAG
ACCTTCTTTGCTAAATGCCCAGAGAGAGAGAAACAAAAGGACAGGGAGGG
AAAGATTGCCTCAGACACTCAAGAATCTCCAAATCCCTCACTAGATGAAA
AGCAAATTAAGGATCCTTGACAGGTTAAAATCAAGTACCTGGGGTGTCTC
TACTGGAGCAAATGAATTTTCAGTTTAATAACTTCCTTACAATTCCCTTG
ATCACTCTCTTCTGTGATCCTTTCGATGGCATAAGCTTATTTCTGGTTTG
TGTCATGAGTTTTAAATATGCCAGTGGCTTTTAATTAAATCCTTGTTTAT
TATGCAGTTAATGGGCTAAGACTAATGACCAAAGGAAAAAAAACAAGCTT
TCAGTCATATGATACTTGAGAAAAATAATAAAGTGGTTTATTCAAGGGTG
AGCCAGCATAAATGCCATTTCTCCTATTTGTTCTCCTACATGAGTTCTGG
AATGATTTGGAACAGTCAGTCACTCTGCCTGGGTGCATCAAGAAATTACT
ATAAATCTATCTGCAGGAGCTGG

CGATGACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXTCAGCAGAGTTATCTCAAATGGCCA
AGAAGCACTTAAAGAAATCACCATCCTTCGCCATTAGGGAAAGCAAATCA
AAACAACTCTGAGACTCTGAGATTCCACCTTATGCTGTCAGAACGGTTAA
GATAAAAAACAAACAAACAAAAACAAACAAACAAACAAACAAAACCACCA
CAAGTGACAGCCCATGCTGTCTAGGATGGAACTAGGGGAACACTTCATTG
CTGGTGAGAGTGCAAACTTGTACATCCACTTTGGAAATCAGTTTGGTGGT
TTCTCAGAAAATTGGGAATAGGTCAACCTCAAGACCCAGCTATACCACTC
CTGGGCATATACCCAACCACGCCCCGCTATTCCAGAGGGTCACTTGCTCA
ACTATGCTCACAGCAGCTTTATTCATAAGAGCTAGAAACTAGAAACAACC
CGAGCAAGCTGGAGGGGTCAAGGACACCACAAGAAGACCCACAGAGTCAA
ATAACCTAGGACCGTGGGAGCTCAAAGAGACTGAACCACTAACCAAAGAC
CATGCAGAACTGGACCTAGGCCCCCACACATTTGTGGCAGATGTGCAGCT
TGGTCTTTATGTGGATCCCCTAACAATCAAAGCAGAGAGAGTGTCTTTGA
CTCAGTTGCCTACTTTTGG

Query= MSMg01no307_e12.b1 MSMg01no307_e12.b1 CHROMAT_FILE:
MSMg01no307_e12.b1 PHD_FILE: MSMg01no307_e12.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:48:17 2005
         (596 letters)



>mm_chr12_78738509_78739511
          Length = 1003

 Score = 1108 bits (573), Expect = 0.0
 Identities = 593/603 (98%), Gaps = 7/603 (1%)
 Strand = Plus / Plus

                                                                       
Query: 1   gcaggcttggaaaaggcattttggtttctatttctatcacacacaaaatggtctgttcct 60
           |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 201 gcaggcttggaaaaggcattttggtttctatttctatcacacgcaaaatggtctgttcct 260

                                                                       
Query: 61  acgttagctctagaccttctttgctaaatgcccagagagagaga----aacaaaaggaca 116
           ||||||||||||||||||||||||||||||||||||||||||||    ||||||||||||
Sbjct: 261 acgttagctctagaccttctttgctaaatgcccagagagagagagagaaacaaaaggaca 320

                                                                       
Query: 117 gggagggaaagattgcctcagacactcaagaatctccaaatccctcactagatgaaaagc 176
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gggagggaaagattgcctcagacactcaagaatctccaaatccctcactagatgaaaagc 380

                                                                       
Query: 177 aaattaaggatccttgacaggttaaaatcaagtacctggggtgtctctactggagcaaat 236
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aaattaaggatccttgacaggttaaaatcaagtacctggggtgtctctactggagcaaat 440

                                                                       
Query: 237 gaattttcagtttaataacttccttacaattcccttgatcactctcttctgtgatccttt 296
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gaattttcagtttaataacttccttacaattcccttgatcactctcttctgtgatccttt 500

                                                                       
Query: 297 cgatggcataagcttatttctggtttgtgtcatgagttttaaatatgccagtggctttta 356
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 cgatggcataagcttatttctggtttgtgtcatgagttttaaatatgccagtggctttta 560

                                                                       
Query: 357 attaaatccttgtttattatgcagttaatgggctaagactaatgaccaaagg---aaaaa 413
           ||||||||||||||||||||||||||||||||||||||||||||||||||||   |||||
Sbjct: 561 attaaatccttgtttattatgcagttaatgggctaagactaatgaccaaaggggaaaaaa 620

                                                                       
Query: 414 aaacaagctttcagtcatatgatacttgagaaaaataataaagtggtttattcaagggtg 473
           |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 621 aaacaagctttcagtcatatgatacttgagaaaaataataaagtggtttatttaagggtg 680

                                                                       
Query: 474 agccagcataaatgccatttctcctatttgttctcctacatgagttctggaatgatttgg 533
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 agccagcataaatgccatttctcctatttgttctcctacatgagttctggaatgatttgg 740

                                                                       
Query: 534 aacagtcagtcactctgcctgggtgcatcaagaaattactataaatctatctgcaggagc 593
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 741 aacagtcagtcactctgcctgggtgcatcaagaaattactataaatctatctgcaggaac 800

              
Query: 594 tgg 596
           |||
Sbjct: 801 tgg 803


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 596
Length of database: 1003
Length adjustment: 10
Effective length of query: 586
Effective length of database: 993
Effective search space:   581898
Effective search space used:   581898
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)