BAC Information

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BAC

Clone NameMSMg01-308C22
Chromosome12 (Build37)
Map Location 70,793,520 - 70,793,812
singlet/doubletsinglet
Overlap geneL2hgdh
Upstream geneLOC100040696, LOC665967, LOC665973, Rps29, Ppil5, Rpl36al, Mgat2, 1110034A24Rik, 9330151L19Rik, Pole2, Klhdc1, Klhdc2, Sdccag1, Arf6, LOC100040856, LOC100040862, Gm71, Sos2, LOC100040879
Downstream geneAtp5s, Cdkl1, Map4k5, Spg3a, EG622339, Sav1, LOC100040999, Nin, ENSMUSG00000056391, Gm804, Pygl, Trim9, Txndc1, LOC100040965, LOC100041061
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-308C22.T7 (MSMg01no308_c22.b1)MSMg01-308C22.TJ (MSMg01no308_c22.g1)
ACCAG432332AG432333
length756747
length of high quality
(start - end)
139 (186 - 324)293 (79 - 371)
definitionCHROMAT_FILE: MSMg01no308_c22.b1 PHD_FILE: MSMg01no308_c22.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:49:26 2005CHROMAT_FILE: MSMg01no308_c22.g1 PHD_FILE: MSMg01no308_c22.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:49:26 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTGCAGAGATCCGCGG
AATTCTAATGTTTTTTCGCCACACACCAGCTCTCTCTCTCTCTCTCTCTC
TCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTC
TCTCTCTCCTGCCTATGGATTAGGATGTAAAGCTCTCAGCTACTACTCTA
GAACCATGCCTGCCTGCTGCCATCCTGAAAATGGAGTCACCCCTTAAACT
GTCTATGGCCTCCATTTAAACACTTTCTATTATGCTACCTTGGTTGGTGT
CTCTTTACAGGAAGAGAACAGTAACTATTATTATCTATTTGATAGAATAA
AGTGTTGCCCAATTCTATGATAACAGCAAAACCCCTTAATATTTTTAAGT
GCATATGCCTCGGGGCGTGTCCCCCCCCACAATGAAGATGAAAACACTGA
AATGCTGAGATAGAGGATCGCCTGGGTCCAAGAGTCTGAGGTTGATCCAA
AAGACACAGGAGAGTGTGTTTCTGATCATTTCTGCATCTTTTTTGTAAAT
CATATCCTATAAAACATACAAATGTAAATAATTCAACTCTTCTTCAGATC
CAAAAAATTAAATAATTTTGCTGAGGTGGGAACAAGTGGAAGTTTATTCA
TAAGGAATTCCACCAAAACTTCTGGAGTATCTAAAAGAAACGTTACTCTG
GGGAATCACCCGCAATCCGATGTATTAAAAACCAAAGCTTTAAGCCTTCT
CCTCCA
TTCGATGACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXTAGAGTAAGCTTATGATCTTAA
ATAAAGACATCTATTCCAATTAAATGTGAATTTGCCTGCTACTTTTGGGA
AGAAGAGCTATTTACAAGTAATGAATTGCTTGGATATCTATGTGGCAGGA
TTTGTTACACTGTTACTGAATAGCCATTCTGTTCGAGCTAAGGCTCTGGG
TTGGCCAGAGTGTCCTCCACAGCCTCTTGCTAAACATGACTTAAGTGCGC
TTCCACAGAACTGCATTTAGGATCAAGACTTTTTTGTCTTAAGAATGCGT
TGAAAGCTTGTAGGCATCTTGGTTCAGGTCCTTANACGNTGCCTTTGTTT
TTGCAGAGGTNNTGGTGGAGNACCCCCCCCCAAACNGAAAGNNATGGAGG
TGGGGGGGAGGATTTTGTGTTTGACGGAGGGACTGGCGAGATTGCAGACC
GCGTCCTTCATGTGAGAAATGCGCCTTCGCCTGCCGCCACTTCCTCCCTG
GCAATTTCTAGAATGATAGCAGAGGAAGCACAGCAAAGGTTTAAGTTATG
AGTGGCAGAGGCAACTGTGCTTGCATTACAGTCCCCCCGCCAGCAATAAG
GGTCTACCAGACGCGCTCTCATATTATAATTTAAGAAACACCTTTGACAA
CCCTGTCTTTTTAAGCCTAAATTCACCTTTGAATTATTACCCGGCCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no308_c22.g1 MSMg01no308_c22.g1 CHROMAT_FILE:
MSMg01no308_c22.g1 PHD_FILE: MSMg01no308_c22.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:49:26 2005
         (293 letters)



>mm_chr12_70793320_70794012
          Length = 693

 Score =  505 bits (261), Expect = e-147
 Identities = 285/293 (97%)
 Strand = Plus / Minus

                                                                       
Query: 1   tagagtaagcttatgatcttaaataaagacatctattccaattaaatgtgaatttgcctg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 493 tagagtaagcttatgatcttaaataaagacatctattccaattaaatgtgaatttgcctg 434

                                                                       
Query: 61  ctacttttgggaagaagagctatttacaagtaatgaattgcttggatatctatgtggcag 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 433 ctacttttgggaagaagagctatttacaagtaatgaattgcttggatatctatgtggcag 374

                                                                       
Query: 121 gatttgttacactgttactgaatagccattctgttcgagctaaggctctgggttggccag 180
           ||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||
Sbjct: 373 gatttgttacactgttactgaatagccattctgctcgagctaaggctctgagttggccag 314

                                                                       
Query: 181 agtgtcctccacagcctcttgctaaacatgacttaagtgcgcttccacagaactgcattt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 313 agtgtcctccacagcctcttgctaaacatgacttaagtgcgcttccacagaactgcattt 254

                                                                
Query: 241 aggatcaagacttttttgtcttaagaatgcgttgaaagcttgtaggcatcttg 293
           |||||||||||||  ||| |||| ||||  |||||||||||||||||||||||
Sbjct: 253 aggatcaagacttggttgccttacgaatatgttgaaagcttgtaggcatcttg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 293
Length of database: 693
Length adjustment: 9
Effective length of query: 284
Effective length of database: 684
Effective search space:   194256
Effective search space used:   194256
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)