BAC Information

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BAC

Clone NameMSMg01-308E12
Chromosome12 (Build37)
Map Location 45,635,558 - 45,635,814
singlet/doubletsinglet
Overlap geneNrcam
Upstream geneLOC100039059, ENSMUSG00000066507, LOC100039081, LOC664854, Dnajb9, LOC100039062, Pnpla8
Downstream geneEG620025, Stxbp6
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-308E12.T7 (MSMg01no308_e12.b1)MSMg01-308E12.TJ (MSMg01no308_e12.g1)
ACCAG432406AG432407
length715862
length of high quality
(start - end)
268 (100 - 367)281 (133 - 413)
definitionCHROMAT_FILE: MSMg01no308_e12.b1 PHD_FILE: MSMg01no308_e12.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:49:34 2005CHROMAT_FILE: MSMg01no308_e12.g1 PHD_FILE: MSMg01no308_e12.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:49:34 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TACCTTTCCGGAGAGGATCCGCGGAATTCCAAATTTTCCCATATGTTAAT
AGTATAAAACCACCTTGGAAAAGAACCATGGAGATGTGTTTTTCTCCAAT
TGGTGTTGGATTTGAGTTGGATGGAGAACTATATCCCATTGTGAGGTATC
ATTAACATGTGCATCGTGTTGTCGGAGTAATAAGATCAGATACCACATAG
AACGTGACGACTCAAATTAATTGTAGATTTCATTCATTTTTTCCAATTGA
GCATAATTATCAATGCATTGCCATTCCTATCCTGGAACAGCCTCCCCACC
CCCACCCCCACCCCCCCACAGCATACATAGCCTTTGTTCTTCCATATGTG
GATGTGAGAAGCTGCTGCAGGGGCAAGTCAGACTTTTCCCCCCCCTTTCT
TTCTCTTGTAATGTCACAATTTTAACTTTCACAATATGTTTATTTGGATT
TCTTTTTCTTTTTTTTTTTTTTAAGGTCCATCCATGTAGATAAATGTGCC
CCCTTTTTATCTTTAACGTGCTAACATTCTCCCTACTAACTTCTGTGTTT
CTCTAATCTTCTTTGTCCACTCCTGTGTTGATGCTGATTGTCTTATATGT
TATAGTTCCTTCATGACTGTAAGCGTCCTTCCCTTCCATTTTATTCTCTA
TCTGCTAAAAGGGTTACTACGCTCCTTGTTTCTTTGATTTATTGCTTGTT
GTATTCTTCTCATTG
CCCCACTCTCTTTATCCTTTATCGCACCCACATACCTNAATCTTTCANCN
NTTTTTCTATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCAGAAAGTTGACCAGCC
CTGAGTCTCTGAATTTATGACTATTCAATAAAAGGAGTGGTTTCTTTGAT
TAATTGAAGTAGCATTTGTCTGTAGGAATAAACATAAATATTAGAAGGCA
GTTTGACAATATATTTTACAACTGTGAACACATACTATGACCAAGGCAAT
TCTTTTTTTTTTAATTCTTTAACCTTTTTTTACAGTCCAGTCGCTATCCC
CCTCCTGGTCCACCCTCCAACTGTTTTTTATCCTATTCTTTCTCTCTAAT
CTCTAAAAAAATGTTTANATAGGATTCCCAAAACCGAACCCACTATATTT
CCCCACTGTCTGGGATTCTTAACCCCCCCCAAAAAAAAGAAAAATCTTCT
TTGGGGGGGGGGGCTCCTCGTGTTTTTATATACGCAAAAAATTGGCATTT
GAATAACGTTGATGCACCAACCCCTCCTTTTTATCACTATTTTCCCCTCC
CCCTCCCCCTTGAATTTGCCCCCCCTTTATATCAACCCCCTCCCCCGCCC
TTTTCATTTTCGCTCTCCCTTTTTTTTTATTTCCACCATTTACCCATATC
CGCCCCTTTTTTTTATCCCCCATCTTATTTTTAATTTGTTTCGTTCGCCC
CCCCTTCCATTTTTTTTTTTATTTATTATTCGCCTCTCTCTTCCTCGCAC
CCCCTTATTATATTCCCCCCCCAAATTCCCCGCGATATTATTATCCCTCG
CACTTTTCTTCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no308_e12.b1 MSMg01no308_e12.b1 CHROMAT_FILE:
MSMg01no308_e12.b1 PHD_FILE: MSMg01no308_e12.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:49:34 2005
         (268 letters)



>mm_chr12_45635358_45636025
          Length = 668

 Score =  456 bits (236), Expect = e-133
 Identities = 256/268 (95%), Gaps = 11/268 (4%)
 Strand = Plus / Plus

                                                                       
Query: 1   ttggtgttggatttgagttggatggagaactatatcccattgtgaggtatcattaacatg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 201 ttggtgttggatttgagttggatggagaactatatcccattgtgaggtatcattagcatg 260

                                                                       
Query: 61  tgcatcgtgttgtcggagtaataagatcagataccacatagaacgtgacgactcaaatta 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tgcatcgtgttgtcggagtaataagatcagataccacatagaacgtgacgactcaaatta 320

                                                                       
Query: 121 attgtagatttcattcattttttccaattgagcataattatcaatgcattgccattccta 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 attgtagatttcattcattttttccaattgagcataattatcaatgcattgccattccta 380

                                                                       
Query: 181 tcctggaacagcctccccacccccacccccacccccccacagcatacatagcctttgttc 240
           |||||||||||||      ||||| |||||    ||||||||||||||||||||||||||
Sbjct: 381 tcctggaacagcc------ccccc-ccccc----ccccacagcatacatagcctttgttc 429

                                       
Query: 241 ttccatatgtggatgtgagaagctgctg 268
           ||||||||||||||||||||||||||||
Sbjct: 430 ttccatatgtggatgtgagaagctgctg 457


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 268
Length of database: 668
Length adjustment: 9
Effective length of query: 259
Effective length of database: 659
Effective search space:   170681
Effective search space used:   170681
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)