BAC Information

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BAC

Clone NameMSMg01-308M05
Chromosome12 (Build37)
Map Location 26,418,421 - 26,568,770
singlet/doubletdoublet
Overlap geneLOC668726
Upstream geneLOC668719, Mboat2, EG629397, C330002I19Rik, Id2, LOC100042973, LOC100042974
Downstream geneRnf144, Rsad2, Tyki, LOC668731, 1700020D12Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-308M05.T7 (MSMg01no308_m05.b1)MSMg01-308M05.TJ (MSMg01no308_m05.g1)
ACCAG432747AG432748
length736735
length of high quality
(start - end)
274 (45 - 318)347 (71 - 417)
definitionCHROMAT_FILE: MSMg01no308_m05.b1 PHD_FILE: MSMg01no308_m05.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:50:10 2005CHROMAT_FILE: MSMg01no308_m05.g1 PHD_FILE: MSMg01no308_m05.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:50:10 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(26,418,421 - 26,418,693)(26,568,425 - 26,568,770)
sequence
TTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCACGCTGTCACTCCTGACTGCTATTTCCTGTGCAGATATGTCATCCA
TAATTCACACATGTCCAGCCTGAAACACTGTGCCGAACCCTGTATGATGT
AGACACAGGGAATGGTTCCTCTTGTGTGAAGAAAGAGATAGGACCCCAGT
CTAGATAGCTACCTACAAAGCTCCTTTAAGATAAATATCCATCTCACAGC
ATGGCACAGGGATCGTCAATGGAGAAGTCATTACTACCTTCAGCATCAGG
ACCCAAGGAGGATTAAGAAACTTTTATCCAAGAGTCAGGAAAGAGGTGAT
TCCCCAGAATCTGTGACATGCAGGGCTCCATTCATAACTTGTGAAGGGAA
AGCTCGGCATAGCTCCCCCCCCCCTCAGACAGCTTATCTGCAGCAGGGAT
GAAAAATTTCACTTCTAACAAAGCTCTGTCCAGAAAGGGCTCTTATCTCA
GAGGCCAGAATGACGATATTTATCAGCGGTGCCTGCTTCTCCACAAACTC
TATTATCCTCAGGTAATAGCTTTCCCTGTGGCTTTCAGTATTCCGTTAGT
CTAATAGATCCACTCTAAAGTAAGTTTCTCTGTAACCTAGATGAATGTAT
GCTGATAAATATGATCCAGCCATTATCTTGCTCGTAATATGTATTTCTCA
ATGCCGCTTGCATTTGATTTCTCGCTTTTCCCCCCN
CCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXTTACCGAAAAATTCCATAATTTCAAGGCTACAGTGTCCCA
AGTGGAAATCTGAAAGCCACACCCGATTGTGCTCCCGAAGATCTGAGCCC
TCAGGTGCCTCTTTAAGGGGGGAGACAGCCAATCCTTGAGCAGGGTCCCT
TTCTTCTCACAGATGGGCAAGACTTTCTTGGTCCTAATTTTTTCTGCAGT
AAGCCAGGTGGTAGGCCCGTTGAGATTGCAGCAGGCAGTCATGCCAGCTT
GCTGCTTCTCTAGATGAGGATTTTTGTTGAATGGACACCTTCTTTGAAAT
CAATAGTGATTTGATTACCTCCTACCTAAAATCTACACAAAGCAAATATG
TCAGGACCCTGAAACACCCCCCCAATTACCTAAATTCAGAACTGATAATG
AATTCCAAACAGCAGAAGTGAGATAATGCCCATTAAAGGTTTGCTGCAGG
GTGTGGGTGGATGAAAAAAAAAAAAAACACAGTGGCCCAACAAGGAGAGA
GGTGTGATGCCAGTCACAGATTGCGGATGGCGAAAAGGCAACGTTATAAA
AAACGACTAAGATTGGGCAGAAGCTCTGGAGAATGTCCACCCCCCTGTCA
TCCAATAGGCAAAGGTATACATGGTTTCTGTACTGTTTAATCAATGTAGG
AGAGAGCTGTCGAGACAGTTTAGTTGAAAAACCTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no308_m05.b1 MSMg01no308_m05.b1 CHROMAT_FILE:
MSMg01no308_m05.b1 PHD_FILE: MSMg01no308_m05.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:50:10 2005
         (274 letters)



>mm_chr12_26418220_26418893
          Length = 674

 Score =  489 bits (253), Expect = e-143
 Identities = 268/273 (98%)
 Strand = Plus / Plus

                                                                       
Query: 2   gcggaattcacgctgtcactcctgactgctatttcctgtgcagatatgtcatccataatt 61
           |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 202 gcggaattcacgctgtcattcctgactgctatttcctgtgcagatatgtcatccataatt 261

                                                                       
Query: 62  cacacatgtccagcctgaaacactgtgccgaaccctgtatgatgtagacacagggaatgg 121
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 262 cacacatgtccagcctgaaacactgtgccgaaccctgtatgatgtagacacagggaatgg 321

                                                                       
Query: 122 ttcctcttgtgtgaagaaagagataggaccccagtctagatagctacctacaaagctcct 181
           ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 322 ttcctcttgtgtgaagaaagagaaaggaccccagtctagatagctacctacaaagctcct 381

                                                                       
Query: 182 ttaagataaatatccatctcacagcatggcacagggatcgtcaatggagaagtcattact 241
           |||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||
Sbjct: 382 ttaagataaatatccatctcacagcatggcacagggaaggtcaatggagaagtcattact 441

                                            
Query: 242 accttcagcatcaggacccaaggaggattaaga 274
           || ||||||||||||||||||||||||||||||
Sbjct: 442 actttcagcatcaggacccaaggaggattaaga 474


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 274
Length of database: 674
Length adjustment: 9
Effective length of query: 265
Effective length of database: 665
Effective search space:   176225
Effective search space used:   176225
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
Query= MSMg01no308_m05.g1 MSMg01no308_m05.g1 CHROMAT_FILE:
MSMg01no308_m05.g1 PHD_FILE: MSMg01no308_m05.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:50:10 2005
         (347 letters)



>mm_chr12_26568225_26568971
          Length = 747

 Score =  646 bits (334), Expect = 0.0
 Identities = 343/346 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   attccataatttcaaggctacagtgtcccaagtggaaatctgaaagccacacccgattgt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 546 attccataatttcaaggctacagtgtcccaagtggaaatctgaaagccacacctgattgt 487

                                                                       
Query: 61  gctcccgaagatctgagccctcaggtgcctctttaaggggggagacagccaatccttgag 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 486 gctcccgaagatctgagccctcaggtgcctctttaaggggggagacagccaatccttgag 427

                                                                       
Query: 121 cagggtccctttcttctcacagatgggcaagactttcttggtcctaattttttctgcagt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 426 cagggtccctttcttctcacagatgggcaagactttcttggtcctaattttttctgcagt 367

                                                                       
Query: 181 aagccaggtggtaggcccgttgagattgcagcaggcagtcatgccagcttgctgcttctc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 366 aagccaggtggtaggcccgttgagattgcagcaggcagtcatgccagcttgctgcttctc 307

                                                                       
Query: 241 tagatgaggatttttgttgaatggacaccttctttgaaatcaatagtgatttgattacct 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||
Sbjct: 306 tagatgaggatttttgttgaatggacaccttctttgaaatcaatagtgatttgaacacct 247

                                                         
Query: 301 cctacctaaaatctacacaaagcaaatatgtcaggaccctgaaaca 346
           ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 246 cctacctaaaatctacacaaagcaaatatgtcaggaccctgaaaca 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 347
Length of database: 747
Length adjustment: 9
Effective length of query: 338
Effective length of database: 738
Effective search space:   249444
Effective search space used:   249444
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)