BAC Information

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BAC

Clone NameMSMg01-308N02
Chromosome12 (Build37)
Map Location 4,045,851 - 4,046,215
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC668262, LOC668267, LOC668270, EG668274, LOC100041946, 1700012B15Rik, Rab10, Kif3c, LOC100043040, Asxl2, LOC627245, Dtnb, LOC668197, Dnmt3a, LOC668289, Pomc1, C030014M07Rik
Downstream geneC330021A05Rik, Adcy3, Cenpo, 2410017P09Rik, Ncoa1, LOC100041995, LOC100042005, LOC100042014, Itsn2, 4930417G10Rik, A830093I24Rik, Pfn4, EG626534, 0610009D07Rik, Fkbp1b, BC068281, Gm1964, Ubxd4, Atad2b
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-308N02.T7 (MSMg01no308_n02.b1)MSMg01-308N02.TJ (MSMg01no308_n02.g1)
ACCAG432787AG432788
length675867
length of high quality
(start - end)
374 (11 - 384)44 (136 - 179)
definitionCHROMAT_FILE: MSMg01no308_n02.b1 PHD_FILE: MSMg01no308_n02.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:50:14 2005CHROMAT_FILE: MSMg01no308_n02.g1 PHD_FILE: MSMg01no308_n02.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:50:14 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TATTCACAGAGGATCCGCGGAATTCTCCTATTTCTCCTCTTATCTGGGTT
CAGCAGTTCACACTGCTGATGCCCTGTTCTGTTTATAGCTGCTGGGAGAA
CACTCCTCGCTGAGTGAAGGCTGAGTTCCTTTTCTTGTACCCAGGCCCTC
AGGACTGGTTCAGAACCTACCTTTCCTCCTGTATCTCCTCTCATATCCCT
TTGGTTAGCATGTGCTCTAACCAAATGAACCATCTGCCTTTCCACAGAGG
TAAAGGTGACTTCCCAGCACCTCGTTTGCTCCTTACGTTCTCCGGAACCC
ACACTCCCGCCTCTCCATAGCTCATTCCTTTCAGAAATCTCCTCCAGTCC
TTTCCACTCCACCCAGGTGGAGTCTCTTTTCTCGGCTCCTCCTATGACTC
TCCTTAATTTTTAAAAAAAATTTAAAATTTTTGATACTGGATCTCATTTA
TCCTAGGTTGGTCCCAAAATCATGTAGCTAATGGTGGTCCTGAACTCCTG
ATCCTCTATGAGCTGAGATTAAACGTGTGCGCCACCCTTCCTGGTTTATG
CAGTGCTAGAGAGCATATCCAGGGCTGTGTGGATACCAGATGTCTTCGTT
TCATTTACTAAAGGTGATCCCCCCCAGAATCGTTCTATATACCTTCCCTG
ATATGTATCGTCCCGTTCTTGCGGG
CTTCCCATCTATATATCCCCCTTTTTTCTTCCTCCTACTAGGCTACCCAC
TCTCCCGATAACGCTATGATAXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXTTGCTCCGAAAAATTCTCCTACCTTTGCT
GGTTCTGGCAGCCTCTGATTTCCCTCTGTTCCCGCCAGGAGGCATTACTA
GCACATCATTTACCGTCGAATTGCTGTCTTGAGTGAGGGCTGTGGTTCAT
GTGTGGTGGGTCCTGGGCACACCGTTAGGCGTGAGTAACAGGAACATGGT
AGATCATCTCTTCCACCTACTTCCCCACCCCTCCGGAAGTATTCAACCGA
TGCAGTAATGCCCGCAATATTCCAAATCGGATGAGTTTCGCAGTGGGCAA
ACTTGAATATATGTTCTGCCGTCAAATCACAGGCAATCAACTATAGGCGC
TCGGTGCATATTACGCCCACAACGCAGACAATGAAAAACCGGTTCCTATC
CACCATTTGATTTCCTATAACTCCGGTGTCCATAACGCCTTTTACTCAGA
ACCTTCTACTTTGTGCCTCGCCGGGGCCCTTAGGCCCTCCCTGGATTGAT
ATTGGCAAACGACGGCCCCTGGCACTGGCCCCTTACGCACATCTTTCGAT
CCCCGCATTCCCCCTTGGCATAAAGGTCTTATAAGACAGGGGGGGCTACG
TTAGTCCTTNCGATCGTGTGCACCGTCTCCTTGTTACGGGGGGCCCCTCC
CTACCGGCTCCCCATATCCCCCTTCTCACCAGAAAAACGCTTGCCCGGAG
AACCCCCCACGACATCCAGAAATTTACTCCCCCCGAGCCTTCTCCCCCGA
TGTTTCCTGCCCACACN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no308_n02.b1 MSMg01no308_n02.b1 CHROMAT_FILE:
MSMg01no308_n02.b1 PHD_FILE: MSMg01no308_n02.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:50:14 2005
         (374 letters)



>mm_chr12_4045642_4046415
          Length = 774

 Score =  667 bits (345), Expect = 0.0
 Identities = 360/365 (98%)
 Strand = Plus / Minus

                                                                       
Query: 10  gaattctcctatttctcctcttatctgggttcagcagttcacactgctgatgccctgttc 69
           |||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 574 gaattctcctacctctcctcttatctgggttcagcagttcacactgctgatgccctgttc 515

                                                                       
Query: 70  tgtttatagctgctgggagaacactcctcgctgagtgaaggctgagttccttttcttgta 129
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 514 tgtttatagctgctgggagaacactcctcgctgagtgaaggctgagttccttttcttgta 455

                                                                       
Query: 130 cccaggccctcaggactggttcagaacctacctttcctcctgtatctcctctcatatccc 189
           ||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||
Sbjct: 454 cccaggccctcaggactgggtcagaacctacctttcctcctgtatctcctcccatatccc 395

                                                                       
Query: 190 tttggttagcatgtgctctaaccaaatgaaccatctgcctttccacagaggtaaaggtga 249
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 394 tttggttagcatgtgctctaaccaaatgaaccatctgcctttccacagaggtaaaggtga 335

                                                                       
Query: 250 cttcccagcacctcgtttgctccttacgttctccggaacccacactcccgcctctccata 309
           |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 334 cttcccagcacctcgtttgctccttacgttctccagaacccacactcccgcctctccata 275

                                                                       
Query: 310 gctcattcctttcagaaatctcctccagtcctttccactccacccaggtggagtctcttt 369
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 274 gctcattcctttcagaaatctcctccagtcctttccactccacccaggtggagtctcttt 215

                
Query: 370 tctcg 374
           |||||
Sbjct: 214 tctcg 210


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 374
Length of database: 774
Length adjustment: 9
Effective length of query: 365
Effective length of database: 765
Effective search space:   279225
Effective search space used:   279225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)