BAC Information

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BAC

Clone NameMSMg01-312H09
Chromosome12 (Build37)
Map Location 67,996,464 - 67,996,732
singlet/doubletsinglet
Overlap geneMdga2
Upstream geneLOC100040700, EG238217
Downstream geneLOC100040745
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-312H09.T7 (MSMg01no312_h09.b1)MSMg01-312H09.TJ (MSMg01no312_h09.g1)
ACCAG434673AG434674
length737741
length of high quality
(start - end)
274 (39 - 312)283 (69 - 351)
definitionCHROMAT_FILE: MSMg01no312_h09.b1 PHD_FILE: MSMg01no312_h09.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:53:32 2005CHROMAT_FILE: MSMg01no312_h09.g1 PHD_FILE: MSMg01no312_h09.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:53:32 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCTT
TGTATACTTCTTTGGGGATTTATATCCAAATTCAAATTGCCTTCCACATA
ATGATTTAATTTTTCCCCCTCTGCCTACTGTGAAGTGTTCAGACCATGAA
ATTATAGAGATGTCAAGTGATGCATAAGTAATCCCCTTAGTCTTTGTATC
ATGAAAGCAGTTCAGGAAAATGAATTTAAGGTTATTGTAGGGTAGGCAGC
ATTTGTACTTGTTTGCTTTCCAAAAACAAAGGATACAATAGTATATTACT
CTGTGATTCAGTAATTGTATTCAGCAGCTCTTGAGTCCAACCGCATTTGG
ATCCTCAATCNTCTCTCCANACTACCCTTTTCTTTGGTGTGTGAACTCTT
GTGATTCCCCCCCCCTGAAAAAAAAAAAAGATTTTGAGGCGTATGTGAAT
AATAATGTATGCTATCTTATATCATGCAAACTGGCATCAGGTGATATCAT
CGTGGCATAATTAACATTGTATCTAGACTATTTAAAAGCATTTCATTGTT
TACACACACTAATATTTATTAGTTTTGATGTATTTTATTGTGAATTTTCA
TTCTTTATACGTGATAATAACAAAATAATTCTAATTTAATGTCTTAGAAA
GATAATGCTGACTTGGTCTTGTTTTCCATTATAATTTTATGGCTTGTTCT
GTATGCTTTGTTTCCCTTTTTTTCATTCCAAACTAAC
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXATTCCTGGTCCTGTCAACTTAACCAACTACCC
TTGGTTGAAGAGGCCATGGATCCAAAAGGAAAAGCTTCAGTCGCCATTTT
TTTAAACCAGTAAATTTCTGATACCTGCATACACATATATCATATACATA
CACATGAGGAGCTCTCACCCGTCACAAAAACATCTTATTACAACAGATGA
GAACTACTATAGAGAACCACAAGAAATGATGGTTGTGTGCCCTGCTGATA
TGCCTCCAATACAATCCCTACATTTGTGGCTCAGGGGAAATCACAGAAGA
CTTTACTTAAAATCCCAAGAGCTAGACCATCAGAGTGTCTTCTGTAAAAC
AGTGTCTTCCCCCCCCGAAAACCAGCAAAAACCTTGGGGGGCGGGAATAT
TGTTGCCTGGAAACAAACTGCCGGATATCTATACTATTCGACATGCCACT
GTATATGGGTATAATTCCACATGGTTCCATCTGCACAAAAATAGCTATAT
AAGCTATAGTTACTCATTGCTCTGACAGAGAGTGAGATATATAGAGATAC
AGATAGATAGAGAGAGAGTGAGATATATTGAGAGATAGCGAGTAATCTCG
GTTTTAGCCTTTACACATTTTTCCTGATGTCAGTTCTTATCCTTAAATAC
CTGTTACATGTAAACTAAATTTCTAGAACCCAAAATATTTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no312_h09.b1 MSMg01no312_h09.b1 CHROMAT_FILE:
MSMg01no312_h09.b1 PHD_FILE: MSMg01no312_h09.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:53:32 2005
         (274 letters)



>mm_chr12_67996260_67996933
          Length = 674

 Score =  482 bits (249), Expect = e-140
 Identities = 264/269 (98%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattctttgtatacttctttggggatttatatccaaattcaaattgccttccacataat 64
           |||||||||| ||||||||||||||||||||| || ||||||||||||||||||||||||
Sbjct: 473 gaattctttgaatacttctttggggatttatacccgaattcaaattgccttccacataat 414

                                                                       
Query: 65  gatttaatttttccccctctgcctactgtgaagtgttcagaccatgaaattatagagatg 124
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 413 gatttaatttttcctcctctgcctactgtgaagtgttcagaccatgaaattatagagatg 354

                                                                       
Query: 125 tcaagtgatgcataagtaatccccttagtctttgtatcatgaaagcagttcaggaaaatg 184
           ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 353 tcaagtgatgcttaagtaatccccttagtctttgtatcatgaaagcagttcaggaaaatg 294

                                                                       
Query: 185 aatttaaggttattgtagggtaggcagcatttgtacttgtttgctttccaaaaacaaagg 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 293 aatttaaggttattgtagggtaggcagcatttgtacttgtttgctttccaaaaacaaagg 234

                                        
Query: 245 atacaatagtatattactctgtgattcag 273
           |||||||||||||||||||||||||||||
Sbjct: 233 atacaatagtatattactctgtgattcag 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 274
Length of database: 674
Length adjustment: 9
Effective length of query: 265
Effective length of database: 665
Effective search space:   176225
Effective search space used:   176225
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)