Query= MSMg01no312_p02.b1 MSMg01no312_p02.b1 CHROMAT_FILE:
MSMg01no312_p02.b1 PHD_FILE: MSMg01no312_p02.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:54:08 2005
(322 letters)
>mm_chr12_49164797_49165522
Length = 726
Score = 567 bits (293), Expect = e-166
Identities = 311/319 (97%), Gaps = 4/319 (1%)
Strand = Plus / Minus
Query: 5 gaattcactatattctcactaaaatttcacattcccaa----tagtcatccactcattac 60
|||||||||||||||||||||||||||||||||||||| || |||||||||||||||
Sbjct: 523 gaattcactatattctcactaaaatttcacattcccaataattattcatccactcattac 464
Query: 61 agtccctttcaaattttcaatattattcctccaaaataccctcatattgtcccaaaagtc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 463 agtccctttcaaattttcaatattattcctccaaaataccctcatattgtcccaaaagtc 404
Query: 121 atatgaatccataaaaaaataacggtttctaaagagcatgaacacaactggaggcagtct 180
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 403 ttatgaatctataaaaaaataacggtttctaaagagcatgaacacaactggaggcagtct 344
Query: 181 agtttctgatctcaaatgtctatacctatagctatatctctatcattatgtttatctata 240
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 343 agtttctgatctcaaatgtctatacctatagctatatctctatcgttatgtttatctata 284
Query: 241 tatacaacaacatatttatcataccaacataccaaaaagtatgttttcaaaaaggccatt 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 283 tatacaacaacatatttatcataccaacataccaaaaagtatgttttcaaaaaggccatt 224
Query: 301 cttgtaacaagtgatgcta 319
|||||||||||||||||||
Sbjct: 223 cttgtaacaagtgatgcta 205
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 322
Length of database: 726
Length adjustment: 9
Effective length of query: 313
Effective length of database: 717
Effective search space: 224421
Effective search space used: 224421
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no312_p02.g1 MSMg01no312_p02.g1 CHROMAT_FILE:
MSMg01no312_p02.g1 PHD_FILE: MSMg01no312_p02.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:54:08 2005
(292 letters)
>mm_chr12_49159928_49160621
Length = 694
Score = 538 bits (278), Expect = e-157
Identities = 288/292 (98%), Gaps = 2/292 (0%)
Strand = Plus / Plus
Query: 1 atccagaaggagaaatgttcacag--ttttttttcctaatttgtgaattttacctttaaa 58
|||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||
Sbjct: 201 atccagaaggagaaatgttcacagttttttttttcctaatttgtgaattttagttttaaa 260
Query: 59 tctttagacagatgtctttcatttagaaacataaaaacagaaaagagtatctgtccatag 118
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tctttagacagatgtctttcatttagaaacataaaaacagaaaagagtatctgtccatag 320
Query: 119 agggctatttcaagggagataagatacagtactcttatataaaggggaagccagaaaata 178
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 agggctatttcaagggagataagatacagtactcttatataaaggggaagccagaaaata 380
Query: 179 atggatcaggaacgattgagtgaagtaagggatagccaggaaagggaggaggaatagagg 238
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 atggatcaggaacgattgagtgaagtaagggatagccaggaaagggaggaggaatagagg 440
Query: 239 aggacaaggtgaaactaaagacatttttgaaaaaggcatatggaaaactaca 290
||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 aggacaaggtgaaactaaagacatttttgaaaaaggcatatggaaaactaca 492
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 292
Length of database: 694
Length adjustment: 9
Effective length of query: 283
Effective length of database: 685
Effective search space: 193855
Effective search space used: 193855
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
