BAC Information

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BAC

Clone NameMSMg01-312P15
Chromosome12 (Build37)
Map Location 78,499,728 - 78,676,977
singlet/doubletdoublet
Overlap geneFut8
Upstream geneHspa2, Gm70, LOC100041694, Plekhg3, Spnb1, Churc1, Gpx2, Rab15, Fntb, Max, LOC100041765, LOC100041772
Downstream geneLOC230765, LOC666659, EG626215, Gphn
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-312P15.T7 (MSMg01no312_p15.b1)MSMg01-312P15.TJ (MSMg01no312_p15.g1)
ACCAG435042AG435043
length731731
length of high quality
(start - end)
320 (42 - 361)194 (121 - 314)
definitionCHROMAT_FILE: MSMg01no312_p15.b1 PHD_FILE: MSMg01no312_p15.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:54:10 2005CHROMAT_FILE: MSMg01no312_p15.g1 PHD_FILE: MSMg01no312_p15.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:54:10 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(78,499,728 - 78,500,044)(78,676,784 - 78,676,977)
sequence
TXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATT
CTTCAGCTTTTGGTGTATTCAACATCTTATTGTAAAAGTTCCCCAGAAGT
TAGAAGTGATACTATATTTCCAAAACTGATTATGTCATACATATGTTTTA
ATGAAAAATCTTAAATCATACTCTCACATGCCCTGTGATCAGTTAAAGCA
GAATGATCTCACTACAATGCTGAGAAGATTTTAACAGTTAAATTGACATT
TGAACCAAGACCCTTAAAGAAATCGCAAAAAACATTCATTGTGAATCCAA
ACAATGTGACTACTTCATAAAATAGAAAATGCAAGTAGAAAGTAGAGTCT
CATCATACCAATATTCAGGAAAAATCTCAATTTAAATGATGAATGATAAT
CAGCAGACACCACAAGACACAGCACAGGTGTTGGAATTGTCTTACAAAGA
TTTTACAAAAACTGTAATACTACAAACTCTCCAGTAGCAATTAGAGGCTT
TAAAGAAGTGAAAAAATATAGAAAGCCTCAGCAAAGAAATAGATGATAGA
AGAAAAAATTGAGTGGAAATGTTAATAGTGAAAACACAGTGACTTCCAGT
GCTCTGTACTATGGCTGTTGCGGAGAAGAGAACTGGTGCACTGGAGGCTA
AGGCAATAAAGTTCAGCCACTTGAGCCGCAGTGAGTGAAGACTATAGGGG
TTAGCAGACACCTAGGGGCATTTGGAACAGG
ACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXCAAATTAATCAAGGAGAAAGATCTGGATAG
GAGAAGAGAGAATTTAGCCCAGAGGAAAAGAGAAGGGAGGGTAGGCAGAT
GAGAATTGAGTTATTCATTGATGAGGATCTCCCTTGTATCATTTCTCTGT
GTCCTCAGTCACCTCCTGAAAAGACTCCCTGCCAAGAGAAATCACCCTGC
AGGCAGAGGAGTGGATTGCCAAGCATGCTAATGTCTGTAGGCTGGTGCCC
TGAATGCTCATGTGAGATTTATAGAAATCACTCCCAAGCGCCATATTTCC
TAGATTGACTTANACTCCANTTCCGNGTTCATAGTACTAAGACCATGGCC
TGAGATTGAAGGCCCCACAAAANNTAACAAAAAAAATGGCGGAGCGCGGG
CAGCCTCTTAACTGTGTCCTCAGGTCACCTGATCTGCACTGGGGATCCTT
AGCAAAAAGATATGGAGAGGCATTCGCAGAATCCAGTGGGTAAGGATGTG
AGATCTGGTGTTGGGAGCCAAGTTTGAGTTGTGTGACTCAGGCAAGTAGC
TCAACTATCTTAATCTTAGGGTCCGCAGCTACAAAGGATTGCAGTGATAA
TACCTCATTCCAAGGGTCATAGTGAGGATTTAACTGTGCTTAGCATAGTA
TTCGGGAAACTGTAAATGCTCCATACATGTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no312_p15.b1 MSMg01no312_p15.b1 CHROMAT_FILE:
MSMg01no312_p15.b1 PHD_FILE: MSMg01no312_p15.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:54:10 2005
         (320 letters)



>mm_chr12_78499525_78500244
          Length = 720

 Score =  574 bits (297), Expect = e-168
 Identities = 312/317 (98%)
 Strand = Plus / Plus

                                                                       
Query: 4   ggaattcttcagcttttggtgtattcaacatcttattgtaaaagttccccagaagttaga 63
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 ggaattcttcagcttttggtgtattcaacatcttattgtaaaagttccccagaagttaga 263

                                                                       
Query: 64  agtgatactatatttccaaaactgattatgtcatacatatgttttaatgaaaaatcttaa 123
           |||||||||| | ||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 agtgatactacaattctaaaactgattatgtcatacatatgttttaatgaaaaatcttaa 323

                                                                       
Query: 124 atcatactctcacatgccctgtgatcagttaaagcagaatgatctcactacaatgctgag 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 324 atcatactctcacatgccctgtgatcagttaaagcagaatgatctcactacaatgctgaa 383

                                                                       
Query: 184 aagattttaacagttaaattgacatttgaaccaagacccttaaagaaatcgcaaaaaaca 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 aagattttaacagttaaattgacatttgaaccaagacccttaaagaaatcgcaaaaaaca 443

                                                                       
Query: 244 ttcattgtgaatccaaacaatgtgactacttcataaaatagaaaatgcaagtagaaagta 303
           |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 444 ttcattgtgaatccaaacaatgtgactacttcataaaatagaaaatgcaaatagaaagta 503

                            
Query: 304 gagtctcatcataccaa 320
           |||||||||||||||||
Sbjct: 504 gagtctcatcataccaa 520


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 320
Length of database: 720
Length adjustment: 9
Effective length of query: 311
Effective length of database: 711
Effective search space:   221121
Effective search space used:   221121
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no312_p15.g1 MSMg01no312_p15.g1 CHROMAT_FILE:
MSMg01no312_p15.g1 PHD_FILE: MSMg01no312_p15.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:54:10 2005
         (194 letters)



>mm_chr12_78676584_78677177
          Length = 594

 Score =  368 bits (190), Expect = e-106
 Identities = 193/194 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   agaggaaaagagaagggagggtaggcagatgagaattgagttattcattgatgaggatct 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 394 agaggaaaagagaagggagggtaggcagatgagaattgagttattcattgatgaggatct 335

                                                                       
Query: 61  cccttgtatcatttctctgtgtcctcagtcacctcctgaaaagactccctgccaagagaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 334 cccttgtatcatttctctgtgtcctcagtcacctcctgaaaagactccctgccaagagaa 275

                                                                       
Query: 121 atcaccctgcaggcagaggagtggattgccaagcatgctaatgtctgtaggctggtgccc 180
           ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 274 atcaccctgcaggcagaggagtggattgccaagcatgctaatgtctgcaggctggtgccc 215

                         
Query: 181 tgaatgctcatgtg 194
           ||||||||||||||
Sbjct: 214 tgaatgctcatgtg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 194
Length of database: 594
Length adjustment: 8
Effective length of query: 186
Effective length of database: 586
Effective search space:   108996
Effective search space used:   108996
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)