BAC Information

Click to search

BAC

Clone NameMSMg01-313B15
Chromosome12 (Build37)
Map Location 78,974,250 - 78,974,588
singlet/doubletsinglet
Overlap genenone
Upstream geneFntb, Max, LOC100041765, LOC100041772, Fut8, LOC230765, LOC666659
Downstream geneEG626215, Gphn, 4921509E07Rik, Mpp5, Atp6v1d, LOC100041878, Eif2s1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-313B15.T7 (MSMg01no313_b15.b1)MSMg01-313B15.TJ (MSMg01no313_b15.g1)
ACCAG435128AG435129
length1,2921,290
length of high quality
(start - end)
368 (501 - 868)339 (478 - 816)
definitionCHROMAT_FILE: MSMg01no313_b15.b1 PHD_FILE: MSMg01no313_b15.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:54:25 2005CHROMAT_FILE: MSMg01no313_b15.g1 PHD_FILE: MSMg01no313_b15.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:54:25 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NNGGGAGCACTGGGCGCTATAGACTCCTATAGGGAGAGGATCCGCGGAAT
TCAGGCCCATACCTAAACATGATAAAAGCAATCTACAGCAAACCAGTAGC
CAACATCAAAGTAAATGGAGAGAAGCCGGAAGCAATCCCACTAAAATCAG
GGACTAGACAAGGCTGCCCACTTTCTCCCTACCTTTTCAACATAGTACTT
GAAGTATTAGCCAGAGCAATTCGACAACAAAAGGAGATCAAGGGGATACA
AATTGGAAAAGAGGAAGTCAAAATATCACTTTTTGCAGATGATATGATAG
TATATATACGTGACCCTAAAAATTCTACCAGAGAACTCCTAAACCTGATA
AACAGCTTCGGTGAAGTAGATGGATATAAAATAAACTCAAACAAGTCAAT
GGTCTTTCTCTATACAAAGAATAAACAGGCTGAGAAAGAAATTAGAAAAA
CTTTTTTTTTCTCACCAGCCACAAATAATATAAAATATCTCAAAGAGACT
CTAACTAAGGAAGTGAAAGATCTGTATGATAAAAACTTCAAATCTCTGAA
GAAAGAAATTAAGGAAGATCTCAGAAGATGGAAAGATCTCCCATGCTCAT
GGATTGGCAGGATCAACATTGTAAAAATGGCTATCTTGCCAAAAGCAATC
TACAGATTCAATGCAATCCCCATCAAAATTCCAACTCAATTCTTTAACGA
ATTAGAAGGAGCAATTTGCAAATTTGTCTGGAATAACAAAAAAGCTAGGA
TAGCAAAAAGTCTTCTCAAGGATAAAAGAACTTCTGGTGGAATCACCATG
CCTGACCTAAAGCTTTACTACAGAGCATTTGTGATAAAAACTGCATGGTA
CTGGTATAGAAACAGACAAGTAGACCAATGGAATAGAATTGAAGACCCAG
AAATGAACCCACACACCTATGGTCACTTGATCTTCGACAAGGGAGCTAAA
ACCATCCCGTGAAAGAAAGACAGCATTTTCAACAATTGGTGCTGGCACAA
CTGGTTGTTATCGTGTAAAAAAAAGCCAAACCGAACCCAACTTATCTCCT
TGAACCAAGGGCAAATCTAAAGGGGATCAAGGAACTTCCCCTAAAAACCC
GAAACCTCTGAACTTATAAAGAAAAACGGGGTAAAACCCCTTAAAAATGG
GCCCCGGGAAAAAATTCTTGAAAAAAACACCAAGGGTTTGGGGTGTAATA
ACAAAAATATAACAAAGGGCCCTCAAGAACCTCCCACCTTCTCTTGGCGA
AAAAACCCCCTAATAAACAAAGAACCACCCCAATGTGGTAAA
CATAAAANNNNNNAACAGACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXCTTTTAACCTGAGGAATACCGAA
TGGCAGAGAAGCACCTGACTTAAAGATCAACATCCCCAATCATCAGGGAA
ATGCAAATCAAAACAACACTGAGATTCCACTTCACTCCAGCCCGAATGGC
TAAGATCAAAAACTCAGGTGACAGCAGATGCTGGCGAGGATGTGGAGAAA
GGGGAACACCTTAGGAATTTTATGCATCTTATTTTGTTTAATCCTCACAA
AAATTCTGCTGGGATCATTCATCCATCCATCCTTTCAATCAATTCCATGT
AACTAACAGCTGGAGTATACCAGGGTCCATGTTAGGCAGACATTTGAAAT
GCATTATGCTTCAAAAACACGCACTGCACTTATTGCTTAGTGAAGGAGAC
AGACACTAAATATTATTTCAAATGAACACAGAATGTTGAGTGTTGCTGAA
AACAATATGATGTCACAAGAACATCTGAACAGGAATGGAGTAAAGGCAAA
GGAAGACGTACCTCAGAAATGAAAGTCTGGTCTGATACCCAAAGAAAGAC
CATTAAGTAGCTATAAAGGAGAGGATTTAGTCCAAATATTTCAAAAGATA
ATAACATGCATAGGTCCTGAGGCAGAACAAGGGATGGCATTTTTAAGTTT
ATGAAAGAATCATCATTTGGAAGCTACTAGAATAATACTTTCCAAAGAAT
GATCTTTGGTCAAATTAAGCAAGCTTTATTTTTTATCGAACAGGGCTATC
TCCCTAAATCAGGGTTTGAGAAAATAACATTAAACATGGGAAATAGTGGG
GCTTATATAGCAAAAACAAACAAGCATACACAAACGCGCACACACACATA
CACACACCACTACAAGGCTAGGCAGTTTGGTACCCAGGGGTTTTGGTTAC
ATGACAGAACATTTCAAAATTATTTGTCAGGATAAGTGTTCTGATTATCC
AGGCAGAGGTCCAGGTATATAGGGTATGGAATATGTCCAAATTCCAAAAT
AGTGGTCAAAGACCTGGGCCAACTGAAGTTTTTACGAAAAACTGGAAAAA
AGTTAATTTAACCTTAAACCAAAGACTTTTAATCCTTAAAAGGAAGCCCA
ACGGGGCCCCCCAAACCAGGGGGCTTTTAAAACCCCTGGGGGAGTTCCCA
AAATCTTGGCCCCAAGGAATAAGTATTAATGCAACTTCTTTTTCCTCGCN
NCCCCCTNCTCTCCCTCCCTGCTACTTTCTCCTCACCTCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no313_b15.g1 MSMg01no313_b15.g1 CHROMAT_FILE:
MSMg01no313_b15.g1 PHD_FILE: MSMg01no313_b15.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:54:25 2005
         (339 letters)



>mm_chr12_78974050_78974788
          Length = 739

 Score =  617 bits (319), Expect = 0.0
 Identities = 334/339 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   acagaatgttgagtgttgctgaaaacaatatgatgtcacaagaacatctgaacaggaatg 60
           ||||||||||||||||||||||  ||  ||||||||||||||||||||||||||||||||
Sbjct: 201 acagaatgttgagtgttgctgagtactgtatgatgtcacaagaacatctgaacaggaatg 260

                                                                       
Query: 61  gagtaaaggcaaaggaagacgtacctcagaaatgaaagtctggtctgatacccaaagaaa 120
           ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gagtaaaggcaaaggaagatgtacctcagaaatgaaagtctggtctgatacccaaagaaa 320

                                                                       
Query: 121 gaccattaagtagctataaaggagaggatttagtccaaatatttcaaaagataataacat 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gaccattaagtagctataaaggagaggatttagtccaaatatttcaaaagataataacat 380

                                                                       
Query: 181 gcataggtcctgaggcagaacaagggatggcatttttaagtttatgaaagaatcatcatt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gcataggtcctgaggcagaacaagggatggcatttttaagtttatgaaagaatcatcatt 440

                                                                       
Query: 241 tggaagctactagaataatactttccaaagaatgatctttggtcaaattaagcaagcttt 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tggaagctactagaataatactttccaaagaatgatctttggtcaaattaagcaagcttt 500

                                                  
Query: 301 attttttatcgaacagggctatctccctaaatcagggtt 339
           |||||||||||||||||||||||||||||||||||||||
Sbjct: 501 attttttatcgaacagggctatctccctaaatcagggtt 539


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 339
Length of database: 739
Length adjustment: 9
Effective length of query: 330
Effective length of database: 730
Effective search space:   240900
Effective search space used:   240900
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)