Query= MSMg01no313_o16.b1 MSMg01no313_o16.b1 CHROMAT_FILE:
MSMg01no313_o16.b1 PHD_FILE: MSMg01no313_o16.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:56:10 2005
(687 letters)
>mm_chr12_5610541_5611627
Length = 1087
Score = 1232 bits (637), Expect = 0.0
Identities = 680/707 (96%), Gaps = 25/707 (3%)
Strand = Plus / Minus
Query: 1 aggcaaaacatagtcggctgctgtagacaatctgaagaagccctatacctgggattaaaa 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 756 aggcaaaacatagtcggctgctgtagacaatctgaagaagccctatacctgggattaaaa 697
Query: 61 ccaaaacatattgttataatacttctgtgtttaaaaaaaaaaaacaaaattccaaaattg 120
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 696 ccaaaacatattgttataatacttctgtgttt-taaaaaaaaaacaaaattccaaaattg 638
Query: 121 tctctccagaggtcaatctcttctggtcctctggtttataaatggtgaaaataagacata 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 637 tctctccagaggtcaatctcttctggtcctctggtttataaatggtgaaaataagacata 578
Query: 181 aaggaagatagtgccataccccattccttaatttccacagacagcaagccagaattaact 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 577 aaggaagatagtgccataccccattccttaatttccacagacagcaagccagaattaact 518
Query: 241 caggtctgttagttctgaccaaagcttttccttgccaaacaaataatgggatttcaatgt 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 517 caggtctgttagttctgaccaaagcttttccttgccaaacaaataatgggatttcaatgt 458
Query: 301 ataccaaggagctcaatctgagagagatggagatgtaagtttcatcaaaaacacacagga 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 457 ataccaaggagctcaatctgagagagatggagatgtaagtttcatcaaaaacacacagga 398
Query: 361 gccatgagtaggaaggacttggataattaagattcatgtttccaacttgagcccttccaa 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 397 gccatgagtaggaaggacttggataattaagattcatgtttccaacttgagcccttccaa 338
Query: 421 cacacaaacagagagagagagaga------gagacagagagagagagagagacagaga-- 472
|||||||||||||||||||||||| |||||||||||||| |||||||||||||
Sbjct: 337 cacacaaacagagagagagagagacagagagagacagagagagacagagagacagagaga 278
Query: 473 cagaga----------cagagacagagacaga--cagagacagagagacagagacagaca 520
|||||| |||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 277 cagagagacagagagacagagacagagacagagacagagacagagagacagagacagaca 218
Query: 521 tagacagaaagacagagagagagggagagagagagagagagagagagcccttatacatac 580
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 217 tagacagaaagacagagagagagggagagagagagagagagag----cccttatacatac 162
Query: 581 agataaaacacaggcaaatagaaactgatcatctagatgcaaacagcacacaggcatgca 640
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 161 agataaaacacaggcaaatagaaactgatcatctagatgcaaacagcacacaggcatgca 102
Query: 641 caatacttacctgcacaagcatgtagaaataataacaggaggcagtc 687
|||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 101 caatacttacctgcacaagcatgtagaaataataacaggaggcagtc 55
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 98
Number of extensions: 6
Number of successful extensions: 6
Number of sequences better than 10.0: 1
Number of HSP's gapped: 3
Number of HSP's successfully gapped: 1
Length of query: 687
Length of database: 1087
Length adjustment: 10
Effective length of query: 677
Effective length of database: 1077
Effective search space: 729129
Effective search space used: 729129
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no313_o16.g1 MSMg01no313_o16.g1 CHROMAT_FILE:
MSMg01no313_o16.g1 PHD_FILE: MSMg01no313_o16.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:56:10 2005
(387 letters)
>mm_chr12_5446834_5447620
Length = 787
Score = 667 bits (345), Expect = 0.0
Identities = 369/381 (96%), Gaps = 8/381 (2%)
Strand = Plus / Plus
Query: 1 ttcagacacttgagcctatggggctatgtttccctttcaaactatacctttctagacaga 60
|||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||
Sbjct: 201 ttcagacacttgagcctatggggctatgtttcccattcaaactacacctttctagacaga 260
Query: 61 agaaagcctttgttcaaggatgaggtctcctaagccatggggctatgcctgagtaccagt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 agaaagcctttgttcaaggatgaggtctcctaagccatggggctatgcctgagtaccagt 320
Query: 121 ggtgtgcctgagttgtgggcagcatcttgatcagctctgggctaaagaactcagggcacc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ggtgtgcctgagttgtgggcagcatcttgatcagctctgggctaaagaactcagggcacc 380
Query: 181 cagttgcctgtgtttcattatagaacctgatgcactgggttttgtgacctctgcctttgg 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 cagttgcctgtgtttcattatagaacctgatgcactgggttttgtgacctctgcctttgg 440
Query: 241 cactcccatgtccctgtgtctggcatagaatgatgcagggcaggcaagggagaaactcag 300
|| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 cattcccatgtccctgtgtttggcatagaatgatgcagggcaggcaagggagaaactcag 500
Query: 301 tgatactctgaggtcatgctttcatc----tttttctcttgttatgatcttaatcttcct 356
|||||||||||||||||||||||||| | |||||||||||||||||||||||||
Sbjct: 501 tgatactctgaggtcatgctttcatcccagt----ctcttgttatgatcttaatcttcct 556
Query: 357 ttccttctggtttctaagatg 377
|||||||||||||||||||||
Sbjct: 557 ttccttctggtttctaagatg 577
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 387
Length of database: 787
Length adjustment: 9
Effective length of query: 378
Effective length of database: 778
Effective search space: 294084
Effective search space used: 294084
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
