BAC Information

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BAC

Clone NameMSMg01-315A15
Chromosome12 (Build37)
Map Location 10,722,341 - 10,722,990
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC382567, Nt5c1b, Rdh14
Downstream geneLOC238074, LOC100042308, EG668435, Kcns3, LOC628276, Msgn1, 5830483C08Rik, Smc6, Vsnl1, EG209550, LOC217390
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-315A15.T7 (MSMg01no315_a15.b1)MSMg01-315A15.TJ (MSMg01no315_a15.g1)
ACCAG435794AG435795
length724717
length of high quality
(start - end)
677 (48 - 724)643 (73 - 715)
definitionCHROMAT_FILE: MSMg01no315_a15.b1 PHD_FILE: MSMg01no315_a15.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:56:24 2005CHROMAT_FILE: MSMg01no315_a15.g1 PHD_FILE: MSMg01no315_a15.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:56:24 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
ATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGC
GGAATTCTTCTGCCTTCCGGAGATTCTCCAGATACTTAAAAGTTACACTC
ATATGTTCATAGCAGCCTTATTTATAATAGCCAGAAGCTGGAAAGAACCC
AGATGCCCCTCAACAGAGGAATGGATACAGAAAATGTGGTATATTTACAA
AATGGATTATTACTCAGCTATTAAAAAGAATGAATTTATGAAATTCCTAG
GCAAATGGATGGACCTGGAGGGCACCATCCTGAGTGAGGTAACCCAATCA
CAAAAGAACTCACATGATATGTACTCACTGACAAGTGGATATTAGCCCAG
AAACTTAGAATACCCAAGATATAAGATACAATTTGCAAAACACATGAAAC
TCAAGAATGAAGACCAAAGCGCGCACACTTTGCCTCTTCTTAGAACTGGG
AACAAAACACCCATGGAAGGAGTTACAAAGACAAAGTTTGGAGCTGAGAT
GAAAGGATGGACCATCTAGAGCCTGCCATACCCGGGGATCCATCCCATAA
TCAGCCTCCAAACGCTGACACCACTGCATACACTAGCAAGATTTTGCTGA
AAGGACCCTGATATAGCTGTCTCTTGTGAAGCTATGCCAGGGCCTAGCAA
ACACAGAAGTGGATGCTCACAGTCAGCTATTGGATGGATCACAGGGCCCC
CAATGGAGGAGCTAGAGAAAGTAT
CGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXTCTTGTGTAGTACAATGTTAGAAATGGA
GTTTCCAATTTCATGATGGAGTGAAAGGTGATAGCAATTAATCAGTGAAT
CCAAGTCCCTAACATCTTTTTAATAATGAAAGAGTTGAGATTAAGGACTA
GTCATCCTTAATGGGATAGCGATGTGGTATGACAGGGCAGAGAATTTCAA
TTGTGATTTTGTTAGTTGGGGTTTACTTTCCTCTCGTGTGTTTTTGAGGC
TTCAATTCAAGCTACAGGATAGAAACTGGAACTTCCATGGCACATTTTCA
GAGCTGTGTGGACATAACTATGTCACACATGTGTGGCTGTGGTGTGCTGC
ATGCAAGTGCACCCCGCCCCGTGCTGTCCTGAAAGCCTGGAGCTCAGAGG
AGGATGCCAGAAACTTTCTTCCTCTACCACACTCCATTTATCCCCTTACG
ACAGGGTGTCTCACTGGACCGTTTTTGTGGGGCTGGGTTACTTGGCCATA
AGTTCCATACCTTCTGAAATATCCCCAGCTATGGTTTCAGGGCTGGGGTT
AGATGTATACATGGTCGCATCACTGCCCAGTTTATCTTATTTTGTTGGTG
TTGATATGTGTGTATTTGTGTAAGTGAATGTCGTGTGTGTTCAGGAGCCT
AAAGAGCTCAAGATAGG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no315_a15.g1 MSMg01no315_a15.g1 CHROMAT_FILE:
MSMg01no315_a15.g1 PHD_FILE: MSMg01no315_a15.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:56:24 2005
         (643 letters)



>mm_chr12_10722263_10723305
          Length = 1043

 Score = 1023 bits (529), Expect = 0.0
 Identities = 616/657 (93%), Gaps = 21/657 (3%)
 Strand = Plus / Minus

                                                                       
Query: 1   tcttgtgtagtacaatgttagaaatggagtttccaatttcatgatggagtgaaaggtgat 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 728 tcttgtgtagtacaatgttagaaatggagtttccaatttcatgatggagtgaaaggtgag 669

                                                                       
Query: 61  agcaattaatcagtgaatccaagtccctaacatctttttaataatgaaagagttgagatt 120
           ||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 668 agcgattaatcagtgaatccaggtccctaacatctttttaataatgaaagagttgagatt 609

                                                                       
Query: 121 aaggactagtcatccttaatgggatagcgatgtggtatgacagggcagagaatttcaa-- 178
            || |||||||  ||||||||||||||| |||||||||| ||||||||||||||||||  
Sbjct: 608 cagcactagtcgcccttaatgggatagcaatgtggtatgccagggcagagaatttcaatt 549

                                                                       
Query: 179 -------ttgtgattttgttagttggggtttactttcctctcgtgtgtttttgaggcttc 231
                  ||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 548 tattcccttgtgattttgttagttggggtttactttcctctcatgtgtttttgaggcttc 489

                                                                       
Query: 232 aattcaagctacaggatagaaactggaacttccatggcacattttcagagctgtgtggac 291
           |||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 488 aattcaagctaccgaatagaaactggaacttccatggcacattttcagagctgtgtggac 429

                                                                       
Query: 292 ataactatgtcacacatgtgtggctgtggtgtgctgcatgcaagtgcaccccgcccc--- 348
           ||||||||||||||||||||||||||||||||| | ||||||||||||       ||   
Sbjct: 428 ataactatgtcacacatgtgtggctgtggtgtgatacatgcaagtgca-------cctgt 376

                                                                       
Query: 349 --gtgctgtcctgaaagcctggagctcagaggaggatgccagaaactttcttcctctacc 406
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 375 gtgtgctgtcctgaaagcctggagctcagaggaggatgccagaaactttcttcctctacc 316

                                                                       
Query: 407 acactccatttatccccttacgacagggtgtctcactggaccgtttttgtggggctgggt 466
           || ||||||||||| ||||| ||||||||||||||| ||||| |||||||||||||||||
Sbjct: 315 acgctccatttatcaccttatgacagggtgtctcacgggaccatttttgtggggctgggt 256

                                                                       
Query: 467 tacttggccataagttccataccttctgaaatatccccagctatggtttcagggctgggg 526
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 255 tacttggccataagttccataccttctgaaatatccccagctatggtttcagggctgggg 196

                                                                       
Query: 527 ttagatgtatacatggtcgcatcactgcccagtttatcttattttgttggtgttgatatg 586
           ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 195 ttagatgtacacatggtcgcatcactgcccagtttatcttattttgttggtgttgatatg 136

                                                                    
Query: 587 tgtgtatttgtgtaagtgaatgtcgtgtgtgttcaggagcctaaagagctcaagata 643
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 135 tgtgtatttgtgtaagtgaatgtcgtgtgtgttcaggagcctaaagagctcaagata 79


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 643
Length of database: 1043
Length adjustment: 10
Effective length of query: 633
Effective length of database: 1033
Effective search space:   653889
Effective search space used:   653889
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)