BAC Information

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BAC

Clone NameMSMg01-315D17
Chromosome12 (Build37)
Map Location 14,304,724 - 14,305,010
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC627199, LOC627189, LOC100043243, LOC100042396, LOC238091, EG633789, LOC668481, AW125753
Downstream geneLOC100043256, Map1lc3-ps7, LOC668492, LOC100042426
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-315D17.T7 (MSMg01no315_d17.b1)MSMg01-315D17.TJ (MSMg01no315_d17.g1)
ACCAG435932AG435933
length729738
length of high quality
(start - end)
287 (120 - 406)172 (113 - 284)
definitionCHROMAT_FILE: MSMg01no315_d17.b1 PHD_FILE: MSMg01no315_d17.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:56:38 2005CHROMAT_FILE: MSMg01no315_d17.g1 PHD_FILE: MSMg01no315_d17.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:56:38 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXTTCCGAGAATCCGCGGAATTCCATA
ACTTTTCCCATTTATGTGTCTTGTTTCAAATTTGCAGTAAGGTCATTGTT
CAACACTAATTCTGAGCAATTTTCTTATTAATGAATTAAGTGTGTTCATT
ACAAATTTTGGATGTTTAACTTTTTTATTACGTGCGTCTTTAAAATACAT
TGCTTTTTGTCATTTGTTTCTCTGCACTTTGCTGTTAGATTCTCTTTAAT
ATCAGGATCATTACAGTTTGATACAGTGTCATTCACTCACAGGTCTACTC
TGGGTGTCTTTGCCTTTGGGTCAGTGACTGGAGCTTCTGTCTTTTATAAT
ACAAGTAGTTTTTGTTTCTTAAGCCTTCAATTCCCTTTGAATTACTTGTA
TTTAAAAACCCCCCGCCCTAAGAAAATGCTACTAATACTGGAGTGCTTAT
TTTATATATTAAAATGTTTCTGTGTATCAATTCTAACAAATTGGTATCTT
CAGAATTTTGTACTGAAATGTCAATATCATGTGCAAATTACATAATATCA
AAATTAAAAATTATACAATATACAATTATACTATATTTGACAATATCATG
TGCAGATTATATAATTGAACTTTTAATTGTCATTGTTTTTATTTTCCCTT
GCTTAATTACTTTCGCTTGCATTTACATCTAATTTTGAATAAAACCGATG
ACAATAACTGTGTTGTCTTGCTACTAATC
CCATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXTGCATGAGTTGGGGGTATTTGCTGT
GGCCAATGGGGCATAAATATATTTGGAAGCTACCATGTGTTTTGGCTGTG
TGCCAATCTCTGCTTTCTTTTTTTCTTTTTCTTCTTCTTCTTTTTCTTTT
TCTTTTTTTTCTTTTCTTTTCTTTCCTTTTCTTTTCTCTCTTTTTTTTTT
CTTTTTTCTGTAATGAGGCCAGTATATGAATGAGACTGTGCAGGTGTCTT
AACAAAGTACTACACACAATGAAATTATTTTTCGAAGCTAGAAGACAAAG
ATTAAGATGTTGTGTATACTTTGGAAAACTCAGCCCTGAGTGCGTTGTCT
CCATCAAATCCCTCGATCTCCCCACACCTCAGTGCAGCCTATGAAAGGAT
ACACGACTTTTGCCTAGATATTACAGATTTCAGTTTGCTGTCTTTATGGG
ATTTCTGAGTATGCAAGCAAGTGGGTCTGTTTTCCGTGACTTCTGACCTG
TTTTCCGTGTTTGTTCCAAATCTGTGTTAGATTTTTATTTTATTATTTTA
TTTACTGTTAGCCTAATGAGACAGTAATGGATTGGATCTAGTTAGGAAGG
CGTGCGAATGGAGAGGAACTGGGAAGGGTAGAGGGAGAAACCATGATCCG
TATATTTTATGTAAGGAAAAATGTTCCATTTTTATTAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no315_d17.b1 MSMg01no315_d17.b1 CHROMAT_FILE:
MSMg01no315_d17.b1 PHD_FILE: MSMg01no315_d17.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:56:38 2005
         (287 letters)



>mm_chr12_14304524_14305210
          Length = 687

 Score =  524 bits (271), Expect = e-153
 Identities = 283/287 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   ttttcttattaatgaattaagtgtgttcattacaaattttggatgtttaacttttttatt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 487 ttttcttattaatgaattaagtgtgttcattacaaattttggatgtttaacttttttatt 428

                                                                       
Query: 61  acgtgcgtctttaaaatacattgctttttgtcatttgtttctctgcactttgctgttaga 120
           ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 427 acgtgggtctttaaaatacattgctttttgtcatttgtttctctgcactttgctgttaga 368

                                                                       
Query: 121 ttctctttaatatcaggatcattacagtttgatacagtgtcattcactcacaggtctact 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 367 ttctctttaatatcaggatcattacagtttgatacagtgtcattcactcacaggtctact 308

                                                                       
Query: 181 ctgggtgtctttgcctttgggtcagtgactggagcttctgtcttttataatacaagtagt 240
           ||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||| |
Sbjct: 307 ctgggtgtctttgtctttgggtcagtgactggagcttatgtcttttataatacaagtaat 248

                                                          
Query: 241 ttttgtttcttaagccttcaattccctttgaattacttgtatttaaa 287
           |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 247 ttttgtttcttaagccttcaattccctttgaattacttgtatttaaa 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 287
Length of database: 687
Length adjustment: 9
Effective length of query: 278
Effective length of database: 678
Effective search space:   188484
Effective search space used:   188484
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)