Query= MSMg01no315_h22.b1 MSMg01no315_h22.b1 CHROMAT_FILE:
MSMg01no315_h22.b1 PHD_FILE: MSMg01no315_h22.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:56:58 2005
(676 letters)
>mm_chr12_98668843_98669918
Length = 1076
Score = 1228 bits (635), Expect = 0.0
Identities = 662/671 (98%)
Strand = Plus / Plus
Query: 6 aattcatttaatatacccattttagggatgcaatttgtgccagaacgtgatttgtccgat 65
|||||| |||||| || |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 206 aattcacttaataaacacattttagggatgcaatttgtgccagaacgtgatttgtccgat 265
Query: 66 aaatgaaaattattttattagtttaccatccattaaaggtatcacaaatcatttattgat 125
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 266 aaatgaaaattattttattagtttaccatccattaaaggtatcacaaatcatttattgat 325
Query: 126 ttttttatggacatataaaaagtatcagctaccaaaagtataagaaatggaatgattcag 185
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 326 ttttttatggacatataaaaagtatcagctaccaaaagtataagaaatggaatgattcag 385
Query: 186 ttgttaagtatgaaataggcatgatatattgaaggctgtttgctctgtcttttgctgagt 245
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 386 ttgttaagtatgaaataggcatgatatattgaaggctgtttgctctgtcttttgctgagt 445
Query: 246 tcaaagtcacatattgcattgctgtgatgttcaagttaaaagttcaaatgcaggccttgc 305
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 446 tcaaagtcacatattgcattgctgtgatgttcaagttaaaagttcaaatgcaggccttgc 505
Query: 306 attatgttagctgagagtagaaagtgaaaatatcaatagattaaagagctggtatttatt 365
||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 506 attctgttagctgagagtataaagtgaaaatatcaatagattaaagagctggtatttatt 565
Query: 366 tgtgactctttaccacatcacatactatctattgatttacttaaaagaaaaatggaggag 425
|||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 566 tgtgactctttaggacatcacatactatctattgatttactaaaaagaaaaatggaggag 625
Query: 426 gaggcttttagccatagaaagagaaaactattttccatggaaaaaagtaccatatagaaa 485
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 626 gaggcttttagccatagaaagagaaaactattttccatggaaaaaaataccatatagaaa 685
Query: 486 actaaatatgcctggtgctgtgtaattgtggagaacatcagaatagcattttgtacaatg 545
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 686 actaaatatgcctggtgctgtgtaattgtggagaacatcagaatagcattttgtacaatg 745
Query: 546 tatttacattctttttaaagatacccttgaattttgtcagaactgatggttacatttaag 605
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 746 tatttacattctttttaaagatacccttgaattttgtcagaactgatggttacatttaag 805
Query: 606 aacttagcttgcacatttacatatatattgaggtcagaactcttggtatgcttccattct 665
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 806 aacttagcttgcacatttacatatatattgaggtcagaactcttggtatgcttccattct 865
Query: 666 attgatagaac 676
|||||||||||
Sbjct: 866 attgatagaac 876
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 676
Length of database: 1076
Length adjustment: 10
Effective length of query: 666
Effective length of database: 1066
Effective search space: 709956
Effective search space used: 709956
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no315_h22.g1 MSMg01no315_h22.g1 CHROMAT_FILE:
MSMg01no315_h22.g1 PHD_FILE: MSMg01no315_h22.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:56:58 2005
(647 letters)
>mm_chr12_98718612_98719661
Length = 1050
Score = 1195 bits (618), Expect = 0.0
Identities = 641/650 (98%), Gaps = 3/650 (0%)
Strand = Plus / Minus
Query: 1 tatgtagaatttatcaccacctaacatggagcatggatcacagaggcttcaattcagtga 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 850 tatgtagaatttatcaccacctaacatggagcatggatcacagaggcttcaattcagtga 791
Query: 61 gacctaagcttgctaaatcctcttctactcattagtacagttaccccaggaatgagatct 120
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 790 gacctgagcttgctaaatcctcttctactcattagtacagttaccccaggaatgagatct 731
Query: 121 cattgcatgtctgaatattgggagaaaaagaaaactttcccctctacacagcaagtgtcg 180
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 730 ccttgcatgtctgaatattgggagaaaaagaaaactttcccctctacacagcaagtgtcg 671
Query: 181 atgatctggtcctcctatctaggacttgcagactccctaaagcgccactatgatcaagag 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 670 atgatctggtcctcctatctaggacttgcagactccctaaagcgccactatgatcaagag 611
Query: 241 acagctattactatgctgacccttttgtaatgtccaatagaaagtaggatgttatccaca 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 610 acagctattactatgctgacccttttgtaatgtccaatagaaagtaggatgttatccaca 551
Query: 301 acccaaggctcctgggttttgaacagagacaaatggtctacttggttccggcgactgtct 360
||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||
Sbjct: 550 acccaaggctcctgggttttgaacagagacaaatggtctacttggttttggtgactgtct 491
Query: 361 ctgctatggcctctctttggatctattttctgggatcacctttccaacatttaatagcta 420
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 490 ctgctacggcctctctttggatctattttctgggatcacctttccaacatttaatagcta 431
Query: 421 ctttttgagtttaagctaaccagagttatcttctagtccagcagttgacagtaatgattg 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 430 ctttttgagtttaagctaaccagagttatcttctagtccagcagttgacagtaatgattg 371
Query: 481 atatgtatgtttataaaaatgaatatggtaatatttatccctttcttt---aaaaaaaac 537
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 370 atatgtatgtttataaaaatgaatatggtaatatttatccctttctttaaaaaaaaaaac 311
Query: 538 ctaaaatatagtgcagaagtacatcaataggcagatctttaattatctttagttatttta 597
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 310 ctaaaatatagtgcagaagtacatcaataggcagatctttaattatctttagttatttta 251
Query: 598 ttactaggctctcattcaaaattactaatcttgattctcttattacttct 647
||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 250 ttactaggctctcattcaaaattactaatcttgattctcttattacttct 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 647
Length of database: 1050
Length adjustment: 10
Effective length of query: 637
Effective length of database: 1040
Effective search space: 662480
Effective search space used: 662480
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
