BAC Information

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BAC

Clone NameMSMg01-316K01
Chromosome12 (Build37)
Map Location 39,028,348 - 39,177,503
singlet/doubletdoublet
Overlap geneDgkb
Upstream geneA530016O06Rik, LOC100043139
Downstream geneLOC668824, LOC100043142, Etv1, LOC100043145
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-316K01.T7 (MSMg01no316_k01.b1)MSMg01-316K01.TJ (MSMg01no316_k01.g1)
ACCAG436924AG436925
length727728
length of high quality
(start - end)		680 (48 - 727)652 (77 - 728)
definitionCHROMAT_FILE: MSMg01no316_k01.b1 PHD_FILE: MSMg01no316_k01.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:58:25 2005CHROMAT_FILE: MSMg01no316_k01.g1 PHD_FILE: MSMg01no316_k01.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:58:25 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(39,028,348 - 39,029,024)(39,176,852 - 39,177,503)
sequence
NCTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGC
GGAATTCTATGGGTGGCTCATAGATGCTATAAGATATAGCATTTTAAAGA
GGAAACCTTGCTGTAGGGGGCACCACATTGGTTTAGCATATGGCCTTTCA
TGGCTACCTGAAGGGACAGGATAAAAGAGTTATGGAATCCACAGAAAGTT
TCTAATGGCAGTGAAAATAATCAAAATGCCCCAGAAATCTATGTAAGCTA
CAAAATAAAAATATCTGCCAAAACGTTTACTTACTGGATGTATATAAATT
CTCCATAATAATCTGGGTCAGATTTTTACATAGACAATTGAATATTTCAG
AATCATCAGAAGGCTCAGAGGGGTTATTTCATTTAAATACTAAATGTGTT
CTAGGAAACTTTCAGAGCCTGAATGCCATTCTTGAAGTCTTGAGGGTCAG
TTAATGAGGTAATAAGTTTCAAAATGAAAAATGACATGGCTGTGATCCAA
GGTGACACACACCTATAATCCCAGTTCTTAGTGAAGAGGAGAATCAAGAT
TCTAAGGCTAGGCTTACCTAAATAGAAAGTTTGACACCAAACCTGAAAAT
GTAATAGCCATCTCAAAAGAAGGAATAAAATGCTTGAGAGAAGGCTCAGT
GATTAAGAGTGCATACTGCTCTTGCAGAGAAACAAACTTGTTGCCTAGCA
CCCACATGGTGGCTCATGACATCCTAT

NCATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXATCGGGAGGCATTTGAACCTTCTC
AAAAAAGCTCCCTTGGGCCCGTTTAAATTAGTCATGTTTACCCATGGAGA
TTTTTAGCCTTATTTCAGATGTCTGCTACTTTATAACATTTGAGCCTCGA
TGCTTAGCTTAATCTGATTAATTGTTGATAATGGAAAGTCATCAAAAAGA
CTCTGTCTGAAACATCCATTTAAAAAGAAAACCTGATTTTATAAATGTAT
AGTGCTGGCTAAAGGGTGAACATTGAAACTGTTTTTATTAGTCAGCTTAG
AGGAACTGTAAGCTTCATCTCTATCAATTTACACAAAAAAACGGAATGGG
CTGGATACTGTCCAAGAAGCTACTATTCGTATGCTAATTAGATATTTAGA
ATAAAAGACTATATTCATGGAAACCAAATTCATGGCCATGGAACTCCAGT
GGCAAGTTGCTTTGGTTAACCCGGGTTTGTTATTGAAAGATTAGTAGATG
GTAGGATTTGACTCATGCAAGAAACAGGCTTCTTTGTTCTCTGGGAGACA
CTCCAGTGAGTTATGTAAGTGCGCGGAAGGAGAACCAAGTGTTAAACGGT
GTCCATTTAATCATAACAACAGAAATGATTGGAAACAAATCTATAATTAA
GAGAAAAGTTCAAAATCCCTCCAGTATT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no316_k01.b1 MSMg01no316_k01.b1 CHROMAT_FILE:
MSMg01no316_k01.b1 PHD_FILE: MSMg01no316_k01.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:58:25 2005
         (680 letters)



>mm_chr12_39028145_39029224
          Length = 1080

 Score = 1216 bits (629), Expect = 0.0
 Identities = 665/677 (98%)
 Strand = Plus / Plus

                                                                       
Query: 4   ggaattctatgggtggctcatagatgctataagatatagcattttaaagaggaaaccttg 63
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 ggaattctatgggtggttcatagatgctataagatatagcattttaaagaggaaaccttg 263

                                                                       
Query: 64  ctgtagggggcaccacattggtttagcatatggcctttcatggctacctgaagggacagg 123
           ||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||
Sbjct: 264 ctgtagggggcaccacattggtttagcatatggccttccatggatacctgaagggacagg 323

                                                                       
Query: 124 ataaaagagttatggaatccacagaaagtttctaatggcagtgaaaataatcaaaatgcc 183
            ||||| | ||||||||||||||||||| | |||||||||||||||||||||||||||||
Sbjct: 324 gtaaaatacttatggaatccacagaaaggtcctaatggcagtgaaaataatcaaaatgcc 383

                                                                       
Query: 184 ccagaaatctatgtaagctacaaaataaaaatatctgccaaaacgtttacttactggatg 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 384 ccagaaatctatgtaagctacaaaataaaaatatctgccaaaacgtttacttattggatg 443

                                                                       
Query: 244 tatataaattctccataataatctgggtcagatttttacatagacaattgaatatttcag 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 444 tatataaattctccataataatctgggtcagatttttacatagacaattgaatttttcag 503

                                                                       
Query: 304 aatcatcagaaggctcagaggggttatttcatttaaatactaaatgtgttctaggaaact 363
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 aatcatcagaaggctcagaggggttatttcatttaaatactaaatgtgttctaggaaact 563

                                                                       
Query: 364 ttcagagcctgaatgccattcttgaagtcttgagggtcagttaatgaggtaataagtttc 423
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 ttcagagcctgaatgccattcttgaagtcttgagggtcagttaatgaggtaataagtttc 623

                                                                       
Query: 424 aaaatgaaaaatgacatggctgtgatccaaggtgacacacacctataatcccagttctta 483
           ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 624 aaagtgaaaaatgacatggctgtgatccaaggtgacacacacctataatcccagttctta 683

                                                                       
Query: 484 gtgaagaggagaatcaagattctaaggctaggcttacctaaatagaaagtttgacaccaa 543
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 684 gtgaagaggagaatcaagattctaaggctaggcttacctaaatagaaagtttgacaccaa 743

                                                                       
Query: 544 acctgaaaatgtaatagccatctcaaaagaaggaataaaatgcttgagagaaggctcagt 603
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 744 acctgaaaatgtaatagccatctcaaaagaaggaataaaatgcttgagagaaggctcagt 803

                                                                       
Query: 604 gattaagagtgcatactgctcttgcagagaaacaaacttgttgcctagcacccacatggt 663
           |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 804 gattaagagtgcatactgctcttgcagagaaacaaacttgttgcctagcatccacatggt 863

                            
Query: 664 ggctcatgacatcctat 680
           |||||||||||||||||
Sbjct: 864 ggctcatgacatcctat 880


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 680
Length of database: 1080
Length adjustment: 10
Effective length of query: 670
Effective length of database: 1070
Effective search space:   716900
Effective search space used:   716900
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no316_k01.g1 MSMg01no316_k01.g1 CHROMAT_FILE:
MSMg01no316_k01.g1 PHD_FILE: MSMg01no316_k01.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:58:25 2005
         (652 letters)



>mm_chr12_39176652_39177703
          Length = 1052

 Score = 1222 bits (632), Expect = 0.0
 Identities = 647/652 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   atcgggaggcatttgaaccttctcaaaaaagctcccttgggcccgtttaaattagtcatg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 852 atcgggaggcatttgaaccttctcaaaaaagctcccttgggcccgtttaaattagtcatg 793

                                                                       
Query: 61  tttacccatggagatttttagccttatttcagatgtctgctactttataacatttgagcc 120
           |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 792 tttatccatggagatttttagccttatttcagatgtctgctactttataacatttgagcc 733

                                                                       
Query: 121 tcgatgcttagcttaatctgattaattgttgataatggaaagtcatcaaaaagactctgt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 732 tcgatgcttagcttaatctgattaattgttgataatggaaagtcatcaaaaagactctgt 673

                                                                       
Query: 181 ctgaaacatccatttaaaaagaaaacctgattttataaatgtatagtgctggctaaaggg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 672 ctgaaacatccatttaaaaagaaaacctgattttataaatgtatagtgctggctaaaggg 613

                                                                       
Query: 241 tgaacattgaaactgtttttattagtcagcttagaggaactgtaagcttcatctctatca 300
           ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 612 tgaacattgaaactgtttttattagtcagcttagaggaactgtgagcttcatctctatca 553

                                                                       
Query: 301 atttacacaaaaaaacggaatgggctggatactgtccaagaagctactattcgtatgcta 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 552 atttacacaaaaaaacggaatgggctggatactgtccaagaagctactattcgtatgcta 493

                                                                       
Query: 361 attagatatttagaataaaagactatattcatggaaaccaaattcatggccatggaactc 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 492 attagatatttagaataaaagactatattcatggaaaccaaattcatggccatggaactc 433

                                                                       
Query: 421 cagtggcaagttgctttggttaacccgggtttgttattgaaagattagtagatggtagga 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 432 cagtggcaagttgctttggttaacccgggtttgttattgaaagattagtagatggtagga 373

                                                                       
Query: 481 tttgactcatgcaagaaacaggcttctttgttctctgggagacactccagtgagttatgt 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 372 tttgactcatgcaagaaacaggcttctttgttctctgggagacactccagtgagttatgt 313

                                                                       
Query: 541 aagtgcgcggaaggagaaccaagtgttaaacggtgtccatttaatcataacaacagaaat 600
           |||||| ||||||||||||||||||||| || ||||||||||||||||||||||||||||
Sbjct: 312 aagtgcacggaaggagaaccaagtgttagacagtgtccatttaatcataacaacagaaat 253

                                                               
Query: 601 gattggaaacaaatctataattaagagaaaagttcaaaatccctccagtatt 652
           ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 252 gattggaaacaaatctataattaagagaaaagttcaaaatccctccagtatt 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 652
Length of database: 1052
Length adjustment: 10
Effective length of query: 642
Effective length of database: 1042
Effective search space:   668964
Effective search space used:   668964
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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