BAC Information

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BAC

Clone NameMSMg01-316L04
Chromosome12 (Build37)
Map Location 12,685,841 - 12,851,289
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC628327, LOC627110, LOC100043209, D12Ertd553e
Downstream geneLOC100043215, Mycn, EG668473, LOC628449, Ddx1, LOC627199, LOC627189, LOC100043243, LOC100042396, LOC238091, EG633789, LOC668481
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-316L04.T7 (MSMg01no316_l04.b1)MSMg01-316L04.TJ (MSMg01no316_l04.g1)
ACCAG436977AG436978
length756758
length of high quality
(start - end)
428 (69 - 496)445 (73 - 517)
definitionCHROMAT_FILE: MSMg01no316_l04.b1 PHD_FILE: MSMg01no316_l04.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:58:31 2005CHROMAT_FILE: MSMg01no316_l04.g1 PHD_FILE: MSMg01no316_l04.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:58:31 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(12,685,841 - 12,686,268)(12,850,845 - 12,851,289)
sequence
AXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAAT
TCTCGAGTCCTTTACAGCCCTTGCCTGCTGTCCTAGGCCAACAGAGATAG
AATGCCTCCACGAGAAAAGCACTCGGGCTCCATCTCTCTGTCTGGAGCGA
CCGAGTCCCTCTGTTTCACCCTTGCAGCCTTACCTCACCCCCACCCCCAT
TGTTTGAAGGAGACGGTCGATGACTTTTTCTTATGGTAGAATGAGGTCAC
AGAGTGATGCTAACCTGCCTCACAAGCTATGCTTGCTCTCCTATTGATTT
AAAACGTCACCAATGCCATGGTCGAGAACAGCCTAACAGGACAATTAGAA
TTTCCTTCTTAAATTGTAGTTGCTGCTGCTGCTGCTGCTAGTGTGTGTGT
GTGTGTGTGTGTGTGCGCGCGTACAAGGGTGTGTGGAGCACACACACAAC
GAATGTGTGCCTCCTTCCACCCTTATATGGGTCCCAGGAATGGAACTTGG
GTCATCAAGCAAGTGTGGCAAGCACCTTTATCTTCTGAGCCATTTTATTG
GCCCCAGGATTCCTTTTTCATCCTTACAGTCCTATTTACAATCCCACCCT
GTTCGAACCTCTGAAAGAGTCAATGTCACCCTTTGTCTTTCTATCCCAGA
GCATCATATGAGTCGTTCTTCCAATCCAGTGTTTCTCATCAAACCTCCAG
TAGGTGTCCTGTCCTCATCGGTCCAGTACCACATGGTCTGCTTGCCCTGT
ATCTTT
CGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXTTTCCGAAATCACTATGTGGACCAAGCTAGCCTTGAGCT
CAAAGATCTGCCCCTCTCCGTCTCCCAGTGCTAGGATAAAGGGATGTGCC
ACCATGCTCCACTTGAAGCAAACTTCTAAAACTAGCCACAGCACAGCAGG
CACAGAGATTCAAACATAAGCCTATGTATAAGAGGGTTTGCTGCTAGGGA
AGGGCTCAGGATCAATTGGCTCCTATTTGGGGGTTCTTAGCCACCAGAAA
GCTGGAGTCTGAGCTACGTTTTTCCTTGTTGCTGAGAGAATTTCACTGAT
TGCTAGCCCTAGCTGTAATGTGCCCGGCTTTAAATTGGCCAGTTTGGTTA
AAAGTATGGCCTAGTACCCAAGCCTTCATTTTGTGAGCAAATGCTAGATT
AGTCCCAAGAAGGAGACAGCTCCACTACTGGCCTGTGCTGGCACCAAGGA
GAATGATCCCCTTCGGACAAATCAGGCATCCAGTCACTACAGCACATCAC
TGGTGGCCTTCCCAGGTTCTAAGAGGTGGAGGTAAATAAAGATCACCTTG
TGGCGGGGCTTACACACCTGACAGTTGGGTTCCCAGGAAGGCGAGCTTAA
GTGGTCTCTTCTGCTCTTCCAACTGCTTGGCACCACTTTTTGTGCTACTT
TTGAAATTTCCTAGCTCTTAAGCAAAATTTTGCCATTGTTATTACACTAA
ATGCTGCA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no316_l04.b1 MSMg01no316_l04.b1 CHROMAT_FILE:
MSMg01no316_l04.b1 PHD_FILE: MSMg01no316_l04.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:58:31 2005
         (428 letters)



>mm_chr12_12685641_12686468
          Length = 828

 Score =  789 bits (408), Expect = 0.0
 Identities = 423/428 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   ccttgcctgctgtcctaggccaacagagatagaatgcctccacgagaaaagcactcgggc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 201 ccttgcctgctgtcctaggccaacagagatagaatgcctccacgagaaaagcacttgggc 260

                                                                       
Query: 61  tccatctctctgtctggagcgaccgagtccctctgtttcacccttgcagccttacctcac 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tccatctctctgtctggagcgaccgagtccctctgtttcacccttgcagccttacctcac 320

                                                                       
Query: 121 ccccacccccattgtttgaaggagacggtcgatgactttttcttatggtagaatgaggtc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ccccacccccattgtttgaaggagacggtcgatgactttttcttatggtagaatgaggtc 380

                                                                       
Query: 181 acagagtgatgctaacctgcctcacaagctatgcttgctctcctattgatttaaaacgtc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 acagagtgatgctaacctgcctcacaagctatgcttgctctcctattgatttaaaacgtc 440

                                                                       
Query: 241 accaatgccatggtcgagaacagcctaacaggacaattagaatttccttcttaaattgta 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 accaatgccatggtcgagaacagcctaacaggacaattagaatttccttcttaaattgta 500

                                                                       
Query: 301 gttgctgctgctgctgctgctagtgtgtgtgtgtgtgtgtgtgtgtgcgcgcgtacaagg 360
           ||||||||||||||||||||||||||||||||||||||||||||||| | |  |||||||
Sbjct: 501 gttgctgctgctgctgctgctagtgtgtgtgtgtgtgtgtgtgtgtgtgtgtatacaagg 560

                                                                       
Query: 361 gtgtgtggagcacacacacaacgaatgtgtgcctccttccacccttatatgggtcccagg 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 gtgtgtggagcacacacacaacgaatgtgtgcctccttccacccttatatgggtcccagg 620

                   
Query: 421 aatggaac 428
           ||||||||
Sbjct: 621 aatggaac 628


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 428
Length of database: 828
Length adjustment: 9
Effective length of query: 419
Effective length of database: 819
Effective search space:   343161
Effective search space used:   343161
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no316_l04.g1 MSMg01no316_l04.g1 CHROMAT_FILE:
MSMg01no316_l04.g1 PHD_FILE: MSMg01no316_l04.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:58:31 2005
         (445 letters)



>mm_chr12_12850558_12851402
          Length = 845

 Score =  806 bits (417), Expect = 0.0
 Identities = 438/445 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   actatgtggaccaagctagccttgagctcaaagatctgcccctctccgtctcccagtgct 60
           |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 732 actatgtggaccaagctagccttgagctcagagatctgcccctctccgtctcccagtgct 673

                                                                       
Query: 61  aggataaagggatgtgccaccatgctccacttgaagcaaacttctaaaactagccacagc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 672 aggataaagggatgtgccaccatgctccacttgaagcaaacttctaaaactagccacagc 613

                                                                       
Query: 121 acagcaggcacagagattcaaacataagcctatgtataagagggtttgctgctagggaag 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 612 acagcaggcacagagattcaaacataagcctatgtataagagggtttgctgctagggaag 553

                                                                       
Query: 181 ggctcaggatcaattggctcctatttgggggttcttagccaccagaaagctggagtctga 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 552 ggctcaggatcaattggctcctatttgggggttcttagccaccagaaagctggagtctga 493

                                                                       
Query: 241 gctacgtttttccttgttgctgagagaatttcactgattgctagccctagctgtaatgtg 300
           |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 492 gctatgtttttccttgttgctgagagaatttcactgattgctagccctagctgtaatgtg 433

                                                                       
Query: 301 cccggctttaaattggccagtttggttaaaagtatggcctagtacccaagccttcatttt 360
           ||||| |||||||||||| |||||||||||||||||||||||||  ||||||||||||||
Sbjct: 432 cccggttttaaattggcccgtttggttaaaagtatggcctagtaggcaagccttcatttt 373

                                                                       
Query: 361 gtgagcaaatgctagattagtcccaagaaggagacagctccactactggcctgtgctggc 420
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 372 gtgagcaaatgctagattagtcccaagaaggagacagctccactactggcctgtgccggc 313

                                    
Query: 421 accaaggagaatgatccccttcgga 445
           |||||||||||||||||||||||||
Sbjct: 312 accaaggagaatgatccccttcgga 288


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 445
Length of database: 845
Length adjustment: 10
Effective length of query: 435
Effective length of database: 835
Effective search space:   363225
Effective search space used:   363225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)