Query= MSMg01no316_o17.b1 MSMg01no316_o17.b1 CHROMAT_FILE:
MSMg01no316_o17.b1 PHD_FILE: MSMg01no316_o17.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:58:48 2005
(714 letters)
>mm_chr12_39353807_39354919
Length = 1113
Score = 1239 bits (641), Expect = 0.0
Identities = 686/711 (96%), Gaps = 19/711 (2%)
Strand = Plus / Minus
Query: 5 gaattcattagttttgcctttcttttggccagagatataacaagggagaaacttgtactc 64
||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 776 gaattcattagttgtgtttttcttttggccagagatataacaagggagaaacttgtactc 717
Query: 65 atatactttctaacacacatccaagctttgagcatacagcatctcattggataattatgt 124
||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||
Sbjct: 716 atatactttctaacacatatccaagctttgagca-acagcatctcattggataattatgt 658
Query: 125 gttcttatacttcctgaagtaaaaataataccattaagatgtagcttcatgaaaacagca 184
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 657 gttcttatactccctgaagtaaaaataataccattaagatgtagcttcatgaaaacagca 598
Query: 185 aaacattgttataaaatgtgcaaaatgacaaatactgtcctcaaaggatagacattctaa 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 597 aaacattgttataaaatgtgcaaaatgacaaatactgtcctcaaaggatagacattctaa 538
Query: 245 tcttctataaaactacggtggaagaagaaaggtatttctactgagctgggcataggtaaa 304
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 537 tcttctataaaactacggtggaagaagaaaggcatttctactgagctgggcataggtaaa 478
Query: 305 tgtctgcaattttagtacctagcagaccatggcaggaggaacactgactagatactattt 364
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 477 tgtctgcaattttagtacctagcagaccatggcaggaggaacactgactagatactattt 418
Query: 365 ccaatagaaaagcaaaaatgaaacaaaaaagtgaaggcacttccactgatacaagtttaa 424
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 417 ccaatagaaaagcaaaaatgaaacaaaaaagtgaaggcacttccactgatacaagtttaa 358
Query: 425 tgtagtatatggctgtaattacagtctccaggagtctgagacaggaagataaccacctag 484
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 357 tgtagtatatggctgtaattacagtctccaggagtctgagacaggaagataaccacctag 298
Query: 485 acccagtctaaaatagtaaacaaagtagaaaattccatatggaaactgggaggttaggtg 544
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 297 acccagtctaaaatagtaaacaaagtagaaaattccatatggaaactgggaggttaggtg 238
Query: 545 caagggacagaaacagagaaacagaaaaaggcttatctatctatctatctatctatctat 604
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 237 caagggacagaaacagagaaacagaaaaaggcttatctatctatctatctatctatctat 178
Query: 605 ctatctatctatctatctat-ctatctatctatctacctgtctgtctgtctgtctgtcta 663
|||||||||||||||||||| | |||||||||||||||||||| |
Sbjct: 177 ctatctatctatctatctatgc---------atctacctgtctgtctgtct--------a 135
Query: 664 tatatcatctatctacctatctctatgtatctatgtggagagagacaaaga 714
|||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 134 tatatcatctatctacctatctctatgtatctatgtggagagagacaaaga 84
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 58
Number of extensions: 15
Number of successful extensions: 15
Number of sequences better than 10.0: 1
Number of HSP's gapped: 8
Number of HSP's successfully gapped: 1
Length of query: 714
Length of database: 1113
Length adjustment: 10
Effective length of query: 704
Effective length of database: 1103
Effective search space: 776512
Effective search space used: 776512
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)
| Query= MSMg01no316_o17.g1 MSMg01no316_o17.g1 CHROMAT_FILE:
MSMg01no316_o17.g1 PHD_FILE: MSMg01no316_o17.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:58:48 2005
(680 letters)
>mm_chr12_39173878_39174957
Length = 1080
Score = 1307 bits (676), Expect = 0.0
Identities = 679/680 (99%)
Strand = Plus / Plus
Query: 1 aacacaaactacatgcatcaaagggaataaattagaaaatatctgcaaagcgttggcaaa 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aacacaaactacatgcatcaaagggaataaattagaaaatatctgcaaagcgttggcaaa 260
Query: 61 atttgacatcttcttttgcctgtgatgataaacaagataattaattctgtcttcatcttt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 atttgacatcttcttttgcctgtgatgataaacaagataattaattctgtcttcatcttt 320
Query: 121 taagtgaggatatgaactctgagattggattataatgtatgtatactgtacattacatta 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 taagtgaggatatgaactctgagattggattataatgtatgtatactgtacattacatta 380
Query: 181 tgcagatagctgcacaaagaggagtcacgtagtaggactgtcactttctgtgtcttgaac 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tgcagatagctgcacaaagaggagtcacgtagtaggactgtcactttctgtgtcttgaac 440
Query: 241 aaatcatactcattagcaagtctgtgctaaagacatttgttagccattgttattcattct 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 aaatcatactcattagcaagtctgtgctaaagacatttgttagccattgttattcattct 500
Query: 301 ctacatatttctgtgggttttttagggtaatttagaaggcagcgcctaccttgcctaaat 360
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 501 ctacatatttctgtgggttttttagggtaatttagaaggcagtgcctaccttgcctaaat 560
Query: 361 ataaaagcaatgttcatcttagagctgtagatgctgtatttggcattcaaagccaggcaa 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 ataaaagcaatgttcatcttagagctgtagatgctgtatttggcattcaaagccaggcaa 620
Query: 421 gcagaatgacttccaaaaatttaaattcagtgattaagtcaattaaatttagaaacaaga 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 gcagaatgacttccaaaaatttaaattcagtgattaagtcaattaaatttagaaacaaga 680
Query: 481 ataggatttcatgttgcacaattatacctagatgttaaaattattgaaaaaagatcatgg 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 ataggatttcatgttgcacaattatacctagatgttaaaattattgaaaaaagatcatgg 740
Query: 541 catttgaaaggtttcatttcacacatacacaaaatgcatttaacaatatcatgataattt 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 catttgaaaggtttcatttcacacatacacaaaatgcatttaacaatatcatgataattt 800
Query: 601 cagtggctgaaaacagatagatccaaacatttgctatttagtaacctttaaaggagacgt 660
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 801 cagtggctgaaaacagatagatccaaacatttgctatttagtaacctttaaaggagacgt 860
Query: 661 ctcaaaatgagttcttaatt 680
||||||||||||||||||||
Sbjct: 861 ctcaaaatgagttcttaatt 880
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 38
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 680
Length of database: 1080
Length adjustment: 10
Effective length of query: 670
Effective length of database: 1070
Effective search space: 716900
Effective search space used: 716900
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
