BAC Information

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BAC

Clone NameMSMg01-316O17
Chromosome12 (Build37)
Map Location 39,174,078 - 39,354,582
singlet/doubletdoublet
Overlap geneDgkb
Upstream geneLOC100043139
Downstream geneLOC668824, LOC100043142, Etv1, LOC100043145
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-316O17.T7 (MSMg01no316_o17.b1)MSMg01-316O17.TJ (MSMg01no316_o17.g1)
ACCAG437134AG437135
length753761
length of high quality
(start - end)
714 (40 - 753)680 (77 - 756)
definitionCHROMAT_FILE: MSMg01no316_o17.b1 PHD_FILE: MSMg01no316_o17.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:58:48 2005CHROMAT_FILE: MSMg01no316_o17.g1 PHD_FILE: MSMg01no316_o17.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:58:48 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(39,353,890 - 39,354,582)(39,174,078 - 39,174,757)
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCA
TTAGTTTTGCCTTTCTTTTGGCCAGAGATATAACAAGGGAGAAACTTGTA
CTCATATACTTTCTAACACACATCCAAGCTTTGAGCATACAGCATCTCAT
TGGATAATTATGTGTTCTTATACTTCCTGAAGTAAAAATAATACCATTAA
GATGTAGCTTCATGAAAACAGCAAAACATTGTTATAAAATGTGCAAAATG
ACAAATACTGTCCTCAAAGGATAGACATTCTAATCTTCTATAAAACTACG
GTGGAAGAAGAAAGGTATTTCTACTGAGCTGGGCATAGGTAAATGTCTGC
AATTTTAGTACCTAGCAGACCATGGCAGGAGGAACACTGACTAGATACTA
TTTCCAATAGAAAAGCAAAAATGAAACAAAAAAGTGAAGGCACTTCCACT
GATACAAGTTTAATGTAGTATATGGCTGTAATTACAGTCTCCAGGAGTCT
GAGACAGGAAGATAACCACCTAGACCCAGTCTAAAATAGTAAACAAAGTA
GAAAATTCCATATGGAAACTGGGAGGTTAGGTGCAAGGGACAGAAACAGA
GAAACAGAAAAAGGCTTATCTATCTATCTATCTATCTATCTATCTATCTA
TCTATCTATCTATCTATCTATCTATCTACCTGTCTGTCTGTCTGTCTGTC
TATATATCATCTATCTACCTATCTCTATGTATCTATGTGGAGAGAGACAA
AGA
CCATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXAACACAAACTACATGCATCAAAGG
GAATAAATTAGAAAATATCTGCAAAGCGTTGGCAAAATTTGACATCTTCT
TTTGCCTGTGATGATAAACAAGATAATTAATTCTGTCTTCATCTTTTAAG
TGAGGATATGAACTCTGAGATTGGATTATAATGTATGTATACTGTACATT
ACATTATGCAGATAGCTGCACAAAGAGGAGTCACGTAGTAGGACTGTCAC
TTTCTGTGTCTTGAACAAATCATACTCATTAGCAAGTCTGTGCTAAAGAC
ATTTGTTAGCCATTGTTATTCATTCTCTACATATTTCTGTGGGTTTTTTA
GGGTAATTTAGAAGGCAGCGCCTACCTTGCCTAAATATAAAAGCAATGTT
CATCTTAGAGCTGTAGATGCTGTATTTGGCATTCAAAGCCAGGCAAGCAG
AATGACTTCCAAAAATTTAAATTCAGTGATTAAGTCAATTAAATTTAGAA
ACAAGAATAGGATTTCATGTTGCACAATTATACCTAGATGTTAAAATTAT
TGAAAAAAGATCATGGCATTTGAAAGGTTTCATTTCACACATACACAAAA
TGCATTTAACAATATCATGATAATTTCAGTGGCTGAAAACAGATAGATCC
AAACATTTGCTATTTAGTAACCTTTAAAGGAGACGTCTCAAAATGAGTTC
TTAATTGTATG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no316_o17.b1 MSMg01no316_o17.b1 CHROMAT_FILE:
MSMg01no316_o17.b1 PHD_FILE: MSMg01no316_o17.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:58:48 2005
         (714 letters)



>mm_chr12_39353807_39354919
          Length = 1113

 Score = 1239 bits (641), Expect = 0.0
 Identities = 686/711 (96%), Gaps = 19/711 (2%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcattagttttgcctttcttttggccagagatataacaagggagaaacttgtactc 64
           ||||||||||||| ||  ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 776 gaattcattagttgtgtttttcttttggccagagatataacaagggagaaacttgtactc 717

                                                                       
Query: 65  atatactttctaacacacatccaagctttgagcatacagcatctcattggataattatgt 124
           ||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||
Sbjct: 716 atatactttctaacacatatccaagctttgagca-acagcatctcattggataattatgt 658

                                                                       
Query: 125 gttcttatacttcctgaagtaaaaataataccattaagatgtagcttcatgaaaacagca 184
           ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 657 gttcttatactccctgaagtaaaaataataccattaagatgtagcttcatgaaaacagca 598

                                                                       
Query: 185 aaacattgttataaaatgtgcaaaatgacaaatactgtcctcaaaggatagacattctaa 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 597 aaacattgttataaaatgtgcaaaatgacaaatactgtcctcaaaggatagacattctaa 538

                                                                       
Query: 245 tcttctataaaactacggtggaagaagaaaggtatttctactgagctgggcataggtaaa 304
           |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 537 tcttctataaaactacggtggaagaagaaaggcatttctactgagctgggcataggtaaa 478

                                                                       
Query: 305 tgtctgcaattttagtacctagcagaccatggcaggaggaacactgactagatactattt 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 477 tgtctgcaattttagtacctagcagaccatggcaggaggaacactgactagatactattt 418

                                                                       
Query: 365 ccaatagaaaagcaaaaatgaaacaaaaaagtgaaggcacttccactgatacaagtttaa 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 417 ccaatagaaaagcaaaaatgaaacaaaaaagtgaaggcacttccactgatacaagtttaa 358

                                                                       
Query: 425 tgtagtatatggctgtaattacagtctccaggagtctgagacaggaagataaccacctag 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 357 tgtagtatatggctgtaattacagtctccaggagtctgagacaggaagataaccacctag 298

                                                                       
Query: 485 acccagtctaaaatagtaaacaaagtagaaaattccatatggaaactgggaggttaggtg 544
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 297 acccagtctaaaatagtaaacaaagtagaaaattccatatggaaactgggaggttaggtg 238

                                                                       
Query: 545 caagggacagaaacagagaaacagaaaaaggcttatctatctatctatctatctatctat 604
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 237 caagggacagaaacagagaaacagaaaaaggcttatctatctatctatctatctatctat 178

                                                                       
Query: 605 ctatctatctatctatctat-ctatctatctatctacctgtctgtctgtctgtctgtcta 663
           |||||||||||||||||||| |         ||||||||||||||||||||        |
Sbjct: 177 ctatctatctatctatctatgc---------atctacctgtctgtctgtct--------a 135

                                                              
Query: 664 tatatcatctatctacctatctctatgtatctatgtggagagagacaaaga 714
           |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 134 tatatcatctatctacctatctctatgtatctatgtggagagagacaaaga 84


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 58
Number of extensions: 15
Number of successful extensions: 15
Number of sequences better than 10.0: 1
Number of HSP's gapped: 8
Number of HSP's successfully gapped: 1
Length of query: 714
Length of database: 1113
Length adjustment: 10
Effective length of query: 704
Effective length of database: 1103
Effective search space:   776512
Effective search space used:   776512
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)
Query= MSMg01no316_o17.g1 MSMg01no316_o17.g1 CHROMAT_FILE:
MSMg01no316_o17.g1 PHD_FILE: MSMg01no316_o17.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:58:48 2005
         (680 letters)



>mm_chr12_39173878_39174957
          Length = 1080

 Score = 1307 bits (676), Expect = 0.0
 Identities = 679/680 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   aacacaaactacatgcatcaaagggaataaattagaaaatatctgcaaagcgttggcaaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aacacaaactacatgcatcaaagggaataaattagaaaatatctgcaaagcgttggcaaa 260

                                                                       
Query: 61  atttgacatcttcttttgcctgtgatgataaacaagataattaattctgtcttcatcttt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 atttgacatcttcttttgcctgtgatgataaacaagataattaattctgtcttcatcttt 320

                                                                       
Query: 121 taagtgaggatatgaactctgagattggattataatgtatgtatactgtacattacatta 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 taagtgaggatatgaactctgagattggattataatgtatgtatactgtacattacatta 380

                                                                       
Query: 181 tgcagatagctgcacaaagaggagtcacgtagtaggactgtcactttctgtgtcttgaac 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tgcagatagctgcacaaagaggagtcacgtagtaggactgtcactttctgtgtcttgaac 440

                                                                       
Query: 241 aaatcatactcattagcaagtctgtgctaaagacatttgttagccattgttattcattct 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 aaatcatactcattagcaagtctgtgctaaagacatttgttagccattgttattcattct 500

                                                                       
Query: 301 ctacatatttctgtgggttttttagggtaatttagaaggcagcgcctaccttgcctaaat 360
           |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 501 ctacatatttctgtgggttttttagggtaatttagaaggcagtgcctaccttgcctaaat 560

                                                                       
Query: 361 ataaaagcaatgttcatcttagagctgtagatgctgtatttggcattcaaagccaggcaa 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 ataaaagcaatgttcatcttagagctgtagatgctgtatttggcattcaaagccaggcaa 620

                                                                       
Query: 421 gcagaatgacttccaaaaatttaaattcagtgattaagtcaattaaatttagaaacaaga 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 gcagaatgacttccaaaaatttaaattcagtgattaagtcaattaaatttagaaacaaga 680

                                                                       
Query: 481 ataggatttcatgttgcacaattatacctagatgttaaaattattgaaaaaagatcatgg 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 ataggatttcatgttgcacaattatacctagatgttaaaattattgaaaaaagatcatgg 740

                                                                       
Query: 541 catttgaaaggtttcatttcacacatacacaaaatgcatttaacaatatcatgataattt 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 catttgaaaggtttcatttcacacatacacaaaatgcatttaacaatatcatgataattt 800

                                                                       
Query: 601 cagtggctgaaaacagatagatccaaacatttgctatttagtaacctttaaaggagacgt 660
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 801 cagtggctgaaaacagatagatccaaacatttgctatttagtaacctttaaaggagacgt 860

                               
Query: 661 ctcaaaatgagttcttaatt 680
           ||||||||||||||||||||
Sbjct: 861 ctcaaaatgagttcttaatt 880


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 38
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 680
Length of database: 1080
Length adjustment: 10
Effective length of query: 670
Effective length of database: 1070
Effective search space:   716900
Effective search space used:   716900
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)