BAC Information

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BAC

Clone NameMSMg01-317E11
Chromosome12 (Build37)
Map Location 48,717,799 - 48,718,131
singlet/doubletsinglet
Overlap genenone
Upstream geneNova1, LOC100039190
Downstream geneEG664891, Gm1818
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-317E11.T7 (MSMg01no317_e11.b1)MSMg01-317E11.TJ (MSMg01no317_e11.g1)
ACCAG437396AG437397
length775729
length of high quality
(start - end)
335 (81 - 415)334 (73 - 406)
definitionCHROMAT_FILE: MSMg01no317_e11.b1 PHD_FILE: MSMg01no317_e11.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:59:16 2005CHROMAT_FILE: MSMg01no317_e11.g1 PHD_FILE: MSMg01no317_e11.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:59:16 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTCAGAGGATCCGCGG
AATTCTTGCTAACTCCCCACATTATGGCTGTCAGAAGGTCGGACTACAGC
TCAGATATTGAAGGGCCAGCTCCACTGTGGCTAGTTATCATCATTTTCTT
TCAGCTATTCATAAAACAGCTTGACTTTAAAAACATATTTTACATAGCTA
TATGCTCACAAGAAGTTGCAGATAATGGTATAGTCAGGTCTCATTTCTTA
TTGATTCCCCTTTATTGTTGGCCTATGTTATACCCAGATAATGATATAAA
AACTGATCACCTAATATGTTTTATAGATTACCACTTATTCTTATTTCACC
ATATAAGACCATTCTATGATACCTTTGTATAGCTTCCATGAAGTTTCATG
AGAAATGACCTCAAACTCACCAACCAAAGAGTTATTTACAGAATAACTCT
TTACACACACACACACACACACACACACGCACACACTCTCACACACGCCT
TGCGTCTCAAGCACTTCATAGAAATTTCTCCAAAACTGACCACATACTCA
GATGCAAAGCANATCTCGATAGATACAGGAAAATTGAAATAGCTCCATTA
CACTATAAGACAACCATGGATTGAACCTGTATCTGAACAGTAACAGAGAC
AACAGAAATCTTACAATCTCTTGGATCCTGAACATCCGAAACGAAAGAGA
AAAATAATCCAAGCCAGGGTTAGAGTTGACCTAATATAATCATAGAGAAC
AATTGCCAAAATGATGAGACCAAGG
TGATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXTTCACTAAACCCATCTGGTGTTTTGCTT
TTTTTGGTTGTAAGATTTTAATGACTGCTTCTATTTCTTTAAGAGTTATG
GGACTGTTTAGTGTTTACCTGATCTGTGTTTAAATTTGGTATTTTGTATC
TGTCTCAAAAACTGTCCTTTTCATCCAGGTTTTCCAGTTTTGTTGAGTAT
AGGCTTTTGTAGTAGGATCTGGTGATTTTTTTGAATTTCCTCAGATTCTG
TTTTTACCTCTCCCTATTCATTTCTGATTTTGTTAATTTGGATACTGTCT
CTGAGCCTTCTGGTTTGTCTAGCTAAGGGTTTATCTGTCCTGCTTATTTT
CTCAAAGAACCACCCCCCGATTTTGTTGATTCTTTGTATAATTCTTTTTG
TTTCCACTTGGTTGATTTCAGCCCTGAGTCTGATTATTTCCTGCCATCTA
CTCCTCTTGGGTATATTACATTCCTTTTGTTCTAGAGCTTCTGTTGTGCT
GTTAAACTGCTAGAATATGTTCTCTTCAATTTTTGGAGGTACTCTGAGCT
ATGAATTTTCCTCTTAGTACTGCTCTTATTGAGNCCCATAAGTTTGGGTA
TATTGTGCCTTCATTTTCATTGGATTCTAAAAAAGACTTTAATTTCTTTC
TTTATTTCTTCCTTGACCAAGTCAGCTTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no317_e11.b1 MSMg01no317_e11.b1 CHROMAT_FILE:
MSMg01no317_e11.b1 PHD_FILE: MSMg01no317_e11.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:59:16 2005
         (335 letters)



>mm_chr12_48717599_48718333
          Length = 735

 Score =  567 bits (293), Expect = e-166
 Identities = 323/333 (96%)
 Strand = Plus / Minus

                                                                       
Query: 1   tcagaaggtcggactacagctcagatattgaagggccagctccactgtggctagttatca 60
           ||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 533 tcagaaggttggactacagctcagatattgaaggaccagctccactgtggctagttatca 474

                                                                       
Query: 61  tcattttctttcagctattcataaaacagcttgactttaaaaacatattttacatagcta 120
           |||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||
Sbjct: 473 tcattttctttcagctattcataaaacaccttgactttaaaaacatattttacataacta 414

                                                                       
Query: 121 tatgctcacaagaagttgcagataatggtatagtcaggtctcatttcttattgattcccc 180
           || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 413 tacgctcacaagaagttgcagataatggtatagtcaggtctcatttcttattgattcccc 354

                                                                       
Query: 181 tttattgttggcctatgttatacccagataatgatataaaaactgatcacctaatatgtt 240
           || ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 353 ttcattgttggcctatgttatacccagagaatgatataaaaactgatcacctaatatgtt 294

                                                                       
Query: 241 ttatagattaccacttattcttatttcaccatataagaccattctatgatacctttgtat 300
           |||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 293 ttatagatcaccacttattcttatttcaccatataaggccattctatgatacctttgtat 234

                                            
Query: 301 agcttccatgaagtttcatgagaaatgacctca 333
           |||||||||||||||||||||||||| ||||||
Sbjct: 233 agcttccatgaagtttcatgagaaatcacctca 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 335
Length of database: 735
Length adjustment: 9
Effective length of query: 326
Effective length of database: 726
Effective search space:   236676
Effective search space used:   236676
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)