Query= MSMg01no317_p07.b1 MSMg01no317_p07.b1 CHROMAT_FILE:
MSMg01no317_p07.b1 PHD_FILE: MSMg01no317_p07.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:00:02 2005
(703 letters)
>mm_chr12_108452052_108453154
Length = 1103
Score = 1245 bits (644), Expect = 0.0
Identities = 680/692 (98%)
Strand = Plus / Plus
Query: 12 acacacacacacacacacacacacacacacacaaaccccagagaatgaagtcaaagtatc 71
|||||||||||||||||| ||||||||||||| ||| |||||||||||||||||||||||
Sbjct: 212 acacacacacacacacacccacacacacacacgaactccagagaatgaagtcaaagtatc 271
Query: 72 tgttacagggcagttctagggttattgtctacatcttccattgggcaccaggggtcatgg 131
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 272 tgttacagggcagttctagggttattgtctaaatcttccattgggcaccaggggtcatgg 331
Query: 132 ctgagcaaggtgacccacagcaagcaagggccctcttgggggtctgctggagaacaggct 191
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 332 ctgagcaaggtgacccacagcaagcgagggccctcttgggggtctgctggagaacaggct 391
Query: 192 gcagaagagccggctctatccttagactaagatcataaaactggggtatggatagaaaat 251
|||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 392 gcagaagagctggctctatccttagactaaggtcataaaactggggtatggatagaaaat 451
Query: 252 gatgaccttggcagtagtgacccttggcattttgcaataaaaaatattgcctcgattggt 311
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 452 gatgaccttggcagtagtgacccttggcattttgcaataaaaaatattgcctcgattggt 511
Query: 312 gttgggaacaggtaatatcattcagatcttatcttcatacattttcctgatatcaagccc 371
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 512 gttgggaacaggtaatatcattcagatcttatcttcatacattttcctgatatcaagccc 571
Query: 372 aaattgaagttccttagtggctacaagtcttgtgtttaaagcagggaaaacagcggcttc 431
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 572 aaattgaagttccttagtggctacaagtcttgtgtttaaagcagggaaaacagcggcttc 631
Query: 432 cacaacacctgtctgatgccagagcacagctgatattcacagcagctagccgcacacctg 491
|||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||
Sbjct: 632 cacaacacctgtctgatgccagagcacagctgatgttcacagcagctagccgcactcctg 691
Query: 492 tgcccatcagccagaggcccgctcctgaatgtcaatcctcctaaaggaaccagacaagaa 551
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 692 tgcccatcagccagaggcccgctcctgaatgtcaatcctcctaaaggaaccagacaagaa 751
Query: 552 gctatggaagagggggacaaatccccacagccacgtgcaggaaggtcacataaccctggg 611
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 752 gctatggaagagggggacaaatccccacagccacgtgcagaaaggtcacataaccctggg 811
Query: 612 agttggggtattgctagatatccaagttgaaagccacacgtgcaggctgacatcctgtca 671
| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 812 aattggggtattgctagatatccaagttgaaagccacacatgcaggctgacatcctgtca 871
Query: 672 gaatgtagggaaatgacagcattgaaatgcac 703
||||||||||||||||||||||||||||||||
Sbjct: 872 gaatgtagggaaatgacagcattgaaatgcac 903
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 56
Number of extensions: 6
Number of successful extensions: 6
Number of sequences better than 10.0: 1
Number of HSP's gapped: 6
Number of HSP's successfully gapped: 1
Length of query: 703
Length of database: 1103
Length adjustment: 10
Effective length of query: 693
Effective length of database: 1093
Effective search space: 757449
Effective search space used: 757449
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)
| Query= MSMg01no317_p07.g1 MSMg01no317_p07.g1 CHROMAT_FILE:
MSMg01no317_p07.g1 PHD_FILE: MSMg01no317_p07.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:00:02 2005
(614 letters)
>mm_chr12_108632736_108633751
Length = 1016
Score = 1098 bits (568), Expect = 0.0
Identities = 604/616 (98%), Gaps = 2/616 (0%)
Strand = Plus / Minus
Query: 1 ctggggaacttttattccacagagttgcttcagtgtctctaaatgctcctggaatggcct 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 816 ctggggaacttttattccacagagttgcttcagtgtctctaaatgctcctggaatggcct 757
Query: 61 ctgctttggcaaaatgtaagaaaccaactgctgcagaactgccggggatctttgtgatta 120
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 756 ctgctttggcaaaatgtaagaaaccaactgctgcagaactgccgggaatctttgtgatta 697
Query: 121 caatgtcatctaccttctcagtcctttcctgaagtccttgcgttggagtccttctgagtc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 696 caatgtcatctaccttctcagtcctttcctgaagtccttgcgttggagtccttctgagtc 637
Query: 181 agtcacatacttttctgttgtgacagtacagtggaacctgtttacttcttcatattggct 240
||| ||||||||||||||||||||||||||||||||||||| | ||||||||||||||||
Sbjct: 636 agttacatacttttctgttgtgacagtacagtggaacctgtctccttcttcatattggct 577
Query: 241 gctgggcatctcagagctggatctttaactccacctggacagctgtggaaggctaatcat 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 576 gctgggcatctcagagctggatctttaactccacctggacagctgtggaaggctaatcat 517
Query: 301 ctaatgtccactgctgtgagctcaattttccctgtgttaactcactgctacctccattct 360
|||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 516 ctaatgtccagtgctgtgagctcaattttccctgtgttaacttactgctacctccattct 457
Query: 361 ctttgagcttcaaccctatttctaatcacagaattgatcacacaat-ccccgtttctctt 419
|||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||
Sbjct: 456 ctttgagcttcaaccctatttctaatcacagaattgatcacacaatcccccctttctctt 397
Query: 420 ctgtctccctccctctcatcaccctcccttttctttatacattgagggagcacac-tgaa 478
|||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||
Sbjct: 396 ctgtctccctccctctcatcaccctcccttctctttatacattgagggagcacacatgaa 337
Query: 479 tggaggtttaagtgtggagcatatgtggctcagctttccccatggtctgggatggaacaa 538
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 336 tggaggtttaagtgtggagcatatgtggctcagctttccccatggtctgggatggaacaa 277
Query: 539 gttcaggacacacttcagaatcacatggtctctgcccccagggttagttttgacatgtgc 598
|||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||
Sbjct: 276 gttcaggacacacttcagaatcacatggtctctgcctccagggttagtcttgacatgtgc 217
Query: 599 tgggctctcaccagga 614
||||||||||||||||
Sbjct: 216 tgggctctcaccagga 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 4
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 614
Length of database: 1016
Length adjustment: 10
Effective length of query: 604
Effective length of database: 1006
Effective search space: 607624
Effective search space used: 607624
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
