BAC Information

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BAC

Clone NameMSMg01-318A18
Chromosome12 (Build37)
Map Location 29,459,170 - 29,459,458
singlet/doubletsinglet
Overlap geneTssc1
Upstream geneLOC669327, 1110015M06Rik, Allc, Colec11, Rps7, Rnaseh1, Adi1, Ttc15
Downstream gene4833405L11Rik, LOC629608, Myt1l, LOC100043496
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-318A18.T7 (MSMg01no318_a18.b1)MSMg01-318A18.TJ (MSMg01no318_a18.g1)
ACCAG437951AG437952
length727724
length of high quality
(start - end)
290 (67 - 356)293 (66 - 358)
definitionCHROMAT_FILE: MSMg01no318_a18.b1 PHD_FILE: MSMg01no318_a18.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:00:08 2005CHROMAT_FILE: MSMg01no318_a18.g1 PHD_FILE: MSMg01no318_a18.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:00:08 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCCC
AAAAAATCACCGGCTAATGCTGTTACCCTTGATTGTCTCCCAGAGGTTAG
AGATAAGTTCCTATGGACGAATGTACCACTCACTTCAGACATAAGACCTG
GAGAACCCAAGATGGAACTCACTTGAAGGCTTACTCTTTGAGGGCTAGCT
TCCATAGTCCCAGAAGCTGCTGTGTAAGTCTCCAAGGGAGGGAACCAACA
GTCATACCCAGTGTGAAGCTTAGGAACACAGTGACAAACACGATGAAGTA
ATAACCCAGTGTGTACAGAAGTAGCACTCACATCTTGGGGGTAACCAACT
GTTCATTCTTTGTAATTTACCCCCACCCCACAGGAGGGAAATCTGCCAGG
TACTGGAAACCTCCCCACCCGCCTGGAGCTAGTGAAGTCATGGAGCTCAA
AGAACTTTTTATCACCACTTTACTAAGCCAGTATATTCCCTAACTCCATT
CTAAATACTTGTCCTTAGGCCCACAGATAAGTGCAGTTCTCTCCCAAGAA
ATTTCTCATAGCAACAGAGGAGACCATTACAGAAACCCTCAACTGGTTGA
AATGCAGAAAACAAATGACCTTGGGGAACCCAGCCCCAGAAGAAACACCT
ATAACACATTCTCTGCACAAGGCTCAGGGAACATTGTGGAAGAGGGATGG
AAAGGCTAAGAACCAGAGGGCTGGGAT
TGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXTCCCGAAATCATAGATGGTTCCTCAGTACTAGGGGCCGTTAGTAC
TTGGGATGGCTAGAACATGGTAGGTGGTCTGGCCAGAACCTGGAATGTGG
TATGCCTTCACCCTCTAGATCTCCATGTGCACACCTTATTCATGAAGCCT
TTCTGCAATGTCAGCAGGAGCTTCTAAAAGGCAGCACAGAACTCTTAGGG
CAGCTGTAGCGTAGGGGCCAGATCCATAGGGTAGATCTGGTATATCTTTT
TCTAGTGTCAACCGTATTGATTTTAAGCAATGAAAGGATTATTGAGCCCT
GTGATTTTTCTGTGAGGAACGCGCAGCTGTAGTGTCTAGGACAGAGAGAG
GACTCTTTTCCCCACCACACCAATCCAGAGCATGTGGTCCAGAGGGACAG
ACAGATGTGACCAGCAGCAATGGTGTGATTTGAATGCTGTGTCTTCTCAT
GAGGTAAAGGTAACTGCCCACTCTGTGGGTTAGAGGCTGTGAAATGGTTT
TTTCAGAGCAACTGCTATCACTTGAGCTTTATGCGTGCATCCATGAAATG
CGGCCTCCTGCAGTGCTGGNGAGGGAAGTTAAGCCATGCTTGTTGCATCT
GTGTCTCCTGCTGTTGAGCATGTAGCTTCTTCAGAGGAGCATGGAGGGAT
ATCCCAGGTGCTCTCTTGCTTGAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no318_a18.g1 MSMg01no318_a18.g1 CHROMAT_FILE:
MSMg01no318_a18.g1 PHD_FILE: MSMg01no318_a18.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:00:08 2005
         (293 letters)



>mm_chr12_29458970_29459662
          Length = 693

 Score =  551 bits (285), Expect = e-161
 Identities = 288/289 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   atagatggttcctcagtactaggggccgttagtacttgggatggctagaacatggtaggt 60
           |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 201 atagatggttcctcagtactaggggccgttagtacttgggatggctagaatatggtaggt 260

                                                                       
Query: 61  ggtctggccagaacctggaatgtggtatgccttcaccctctagatctccatgtgcacacc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ggtctggccagaacctggaatgtggtatgccttcaccctctagatctccatgtgcacacc 320

                                                                       
Query: 121 ttattcatgaagcctttctgcaatgtcagcaggagcttctaaaaggcagcacagaactct 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ttattcatgaagcctttctgcaatgtcagcaggagcttctaaaaggcagcacagaactct 380

                                                                       
Query: 181 tagggcagctgtagcgtaggggccagatccatagggtagatctggtatatctttttctag 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tagggcagctgtagcgtaggggccagatccatagggtagatctggtatatctttttctag 440

                                                            
Query: 241 tgtcaaccgtattgattttaagcaatgaaaggattattgagccctgtga 289
           |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tgtcaaccgtattgattttaagcaatgaaaggattattgagccctgtga 489


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 293
Length of database: 693
Length adjustment: 9
Effective length of query: 284
Effective length of database: 684
Effective search space:   194256
Effective search space used:   194256
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)