BAC Information

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BAC

Clone NameMSMg01-318F14
Chromosome12 (Build37)
Map Location 11,635,738 - 11,635,986
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC238074, LOC100042308, EG668435, Kcns3, LOC628276, Msgn1, 5830483C08Rik, Smc6, Vsnl1, EG209550
Downstream geneLOC217390, LOC628327, LOC627110, LOC100043209, D12Ertd553e
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-318F14.T7 (MSMg01no318_f14.b1)MSMg01-318F14.TJ (MSMg01no318_f14.g1)
ACCAG438175AG438176
length752754
length of high quality
(start - end)
370 (46 - 415)249 (73 - 321)
definitionCHROMAT_FILE: MSMg01no318_f14.b1 PHD_FILE: MSMg01no318_f14.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:00:31 2005CHROMAT_FILE: MSMg01no318_f14.g1 PHD_FILE: MSMg01no318_f14.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:00:31 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCTTTGAGAATGCCTGTGTGTTAGTTTGAATAGGAATGATCCCATAA
ACTCATGTGTTTGAATTTTTAGTCTATACGGAGTGTGACTTTTTTTAGAG
TAGGTAGCGATTTGTTGGAGGAAGTGTATCACTAGGGTGTAGGTTTTGAG
ATTTCAGAAGCTCACAGTTCACTTCCTGCTGCCTGCCAATGCAGATGTAG
AAATCTCAAGTCCTTCTGTAGTATCATACCTGATGACACACCACTGTGCT
TCCTGCTAGGATAGAAACGGATTATTCCTCTAATACTATAAGCCAGCCCC
AATTAACTGTTTTCCTTTATAAGATTTGCAATGCTCATGGTGTCTCTTCA
GAGCAGTAGAAACCCTCAACCACCGCACAATTTATTTTTGTTATATTCAC
CCCTTCCTCATTCCTCTCAGATAGAACCCCTCTTTCCACATCCTACCAAA
TTTGTATGGCTTTTCCTCCCAATATTCCACCAATTCTAATTTATGCTGCC
CATGGACTTGTGTGAGTCATTGTCAGGCAACTTTAGTTGCTGGGAGTTCT
TGACATCTGCCTCTTAATAATCTTTCTGCTTTCCCTTCTGCTACCAAAGG
CAGGTAGTGTAGGTACTTCATTTGTGGCAGACCATTCCCCTGATATTTAC
TCTCTGATAACCATAATTCACTACCTTAAGAAATTTCTCCCTTGAGATCC
CN
CGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXAAAGGTGGTCTCCAAGTTCTCAAGATCC
TGGCTACTTTAGTGTGTTGTTAATCCTTTAGGGCTGCCTCAGTGTTCTGA
GCTGCAAAATGAAAGAGTTTGGGCAGTTAGGCTTTCGTCATCGTTGACGT
CATGGACGTATTGATGGGAGGAGCTATTATATAAAACCAGAAAGGCAAAC
ACCGGGGCAGATGTAGAGCCTGACTTCTAAACATCTGGAATGTGCAATGC
AGAGAGTAGAGGCTGTAAGTAGTTATTAGATATCTCTGGGGAAGAGAACA
CAATGTGCAGCCTGAGCATGGAGGAGGAAGAAGCTGAATTAACATTCCCT
CAGCCTTTAGTGCCCGCACCCCCACAAAAGGCAGCCAGGTCTTAGCACAG
GCTATCTCAGAATGTCCAGCAGAGAGCTCAGGGGGAAACCAGGAGAAGCT
GACCTAAGGTTTGCACTCATGACCTCAGGTGGCCTCATTCCCATACAAAT
TTGTCCTGAGAAGAAGGATGGCAGTTTTCTTCTACCCTTAGAGTTGTTCA
TGCCCTGATAACATGTAGAACATTTTCTTTACTTTTCCAAATCCAGAAAC
TCACTCAAGTTTTGGATAAGGCATATATAAAACAATGCCTGCCCTTTAGC
ACCCTGTATTTCCCAGCAGGACCAGCCTTTATTACTGCAAGCTGTGTGAG
ATTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no318_f14.g1 MSMg01no318_f14.g1 CHROMAT_FILE:
MSMg01no318_f14.g1 PHD_FILE: MSMg01no318_f14.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:00:31 2005
         (249 letters)



>mm_chr12_11635538_11636186
          Length = 649

 Score =  474 bits (245), Expect = e-138
 Identities = 248/249 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   aaaggtggtctccaagttctcaagatcctggctactttagtgtgttgttaatcctttagg 60
           |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aaagatggtctccaagttctcaagatcctggctactttagtgtgttgttaatcctttagg 260

                                                                       
Query: 61  gctgcctcagtgttctgagctgcaaaatgaaagagtttgggcagttaggctttcgtcatc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gctgcctcagtgttctgagctgcaaaatgaaagagtttgggcagttaggctttcgtcatc 320

                                                                       
Query: 121 gttgacgtcatggacgtattgatgggaggagctattatataaaaccagaaaggcaaacac 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gttgacgtcatggacgtattgatgggaggagctattatataaaaccagaaaggcaaacac 380

                                                                       
Query: 181 cggggcagatgtagagcctgacttctaaacatctggaatgtgcaatgcagagagtagagg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 cggggcagatgtagagcctgacttctaaacatctggaatgtgcaatgcagagagtagagg 440

                    
Query: 241 ctgtaagta 249
           |||||||||
Sbjct: 441 ctgtaagta 449


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 249
Length of database: 649
Length adjustment: 9
Effective length of query: 240
Effective length of database: 640
Effective search space:   153600
Effective search space used:   153600
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)