BAC Information

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BAC

Clone NameMSMg01-319I13
Chromosome12 (Build37)
Map Location 77,499,211 - 77,499,577
singlet/doubletsinglet
Overlap genenone
Upstream geneRhoj, Gphb5, Ppp2r5e, Wdr89, LOC665931, Sgpp1, Syne2, Esr2, LOC665957, Tex21, Mthfd1, Akap5, Zbtb25, Zbtb1
Downstream geneHspa2, Gm70, LOC100041694, Plekhg3, Spnb1, Churc1, Gpx2, Rab15, Fntb, Max, LOC100041765, LOC100041772, Fut8
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-319I13.T7 (MSMg01no319_i13.b1)MSMg01-319I13.TJ (MSMg01no319_i13.g1)
ACCAG439032AG439033
length738790
length of high quality
(start - end)
372 (40 - 411)79 (125 - 203)
definitionCHROMAT_FILE: MSMg01no319_i13.b1 PHD_FILE: MSMg01no319_i13.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:01:53 2005CHROMAT_FILE: MSMg01no319_i13.g1 PHD_FILE: MSMg01no319_i13.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:01:54 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCC
AATCTGTTTCTATATCCTCAAATTACAAGCTGTTGCTCATTGTTTTTCTC
TTCAGGCCTCCTCTGACCCATTCCAACCCTAAGAAGGTTGTGCTTGGGTG
AGATTAGAAGGTCCAGGAGAATTCAGCCCTGTGCTCTTCTACCAACGAGC
ACTGGTCCACTACCGAACACATCACCTCAGGTCTCACATTAGCTCAAGGT
CTCCAGCACAGGTGTTCTCAGATAGGAACCTGTCTCAATTGTTTGCCTCT
GCAATGTCATTTAATACTTAAATGTGTGAGAGGATTTTTTTTCTTACCCA
GGGGAAAGGTGAAATTGTTTTCAGATTGCAATAGTGTGCTTTGGGTAATG
TGTGATAAACCCCCCCCGCCCTGGGAATATAGCCTAGAGATGAGGGAGGG
GCATTTGCAGGCTTTGTGTACATGAAATCTTGGGTTCAATCACCAACGCC
ATGCCAAAAATCAAAAGCCACCAGGCGAGGCATTCCTACTGCATTCCAGA
AACTCTTCTGGGGACTAGGGATTGATTGAAGAGTGTTTACAGTATGATAT
AGCTCTTGATTCTTTGACACATCTGTGGACATTTAGTCTTTGGATTATAA
AATACTTTGATAACAGTCCCTGTTTGATCTGATAATGAGATATTTACCTG
TTGTCAATCCGTCCTGCTTATGGGTAACTTTCGTGATT
ATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXTCTTAGGTCTACCCAAGGAAATATAATTC
CTGGCATCTCTCCATTTGCCCCCTGTGTGTGTGTGTGGGGGGGGGCACTT
TCTGCTTTGTGGGTTTTGTTTGTTTTAAAGGATATTTATTTTATTTTTGC
GTGTCTGAGTGAATGAAAGACCACGTGAGATACGGTGTCCTCGTATTTTT
ATATAGCAGATCAAAGTTTCTGAACTGCTGATCATAGCTGCTGTGACCCA
AACACATAATCTTCACTTTTTTTTTTTGCACTATAAACAACCCGCACATT
ATTGAAATGAAGTTTTTTTTTTCCCCCCCCCCCCCCCCCTTACATTTTAT
ATTTATTACTATTAATTTTTCCGCACCCCCCCCAAAAAATATAAAATTAT
GGTTTGTTATATGAATATCTTTTATTTTTTTCCTACTGTCTTACTTCTTT
CAATCTCCTTTATTTTTTCACTTTTTTCTTGCCCTTTTTACTTTTCTTTT
CAACATTTGTTACCCTGATATTTTTTCTTTCCTATATCTATTTTTGTATA
TTATACTCTACTATTCTCCCTGTAATTTACAAATGTACTATTAATATTCT
TCTTTATTCTTTACAATTATGATTTATATTTGTTATCCTTCTTTATTTTT
ATTTTTCCTATAATTTTTCAACAAACCCTTTTATCTAATTTTAAATAAGC
TTTACACTTCTCCTCATTCCGATCTCTTTTTTACTCCTTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no319_i13.b1 MSMg01no319_i13.b1 CHROMAT_FILE:
MSMg01no319_i13.b1 PHD_FILE: MSMg01no319_i13.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:01:53 2005
         (372 letters)



>mm_chr12_77499007_77499778
          Length = 772

 Score =  609 bits (315), Expect = e-179
 Identities = 354/367 (96%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattccaatctgtttctatatcctcaaattacaagctgttgctcattgtttttctcttc 64
           ||||||||||||| || || |||||||||||||||||||||||||||| |||||||||||
Sbjct: 205 gaattccaatctgcttatacatcctcaaattacaagctgttgctcattttttttctcttc 264

                                                                       
Query: 65  aggcctcctctgacccattccaaccctaagaaggttgtgcttgggtgagattagaaggtc 124
           |||||||||| || | ||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 265 aggcctcctcagagcaattccaaccctaagaaggttgtgcttgggtgggattagaaggtc 324

                                                                       
Query: 125 caggagaattcagccctgtgctcttctaccaacgagcactggtccactaccgaacacatc 184
           |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 325 caggagaattcagccctgtgctcttctaccaacgagcactggtccactaccgcacacatc 384

                                                                       
Query: 185 acctcaggtctcacattagctcaaggtctccagcacaggtgttctcagataggaacctgt 244
           ||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||
Sbjct: 385 acctcaggtctcacattagctcaaggtctccagcacaggtgttttcagataggaccctgt 444

                                                                       
Query: 245 ctcaattgtttgcctctgcaatgtcatttaatacttaaatgtgtgagaggattttttttc 304
           ||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||
Sbjct: 445 ctcaattgtttgcctctgcaatgtcatttaatacagaaatgtgtgagaggattttttttc 504

                                                                       
Query: 305 ttacccaggggaaaggtgaaattgttttcagattgcaatagtgtgctttgggtaatgtgt 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 ttacccaggggaaaggtgaaattgttttcagattgcaatagtgtgctttgggtaatgtgt 564

                  
Query: 365 gataaac 371
           |||||||
Sbjct: 565 gataaac 571


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 372
Length of database: 772
Length adjustment: 9
Effective length of query: 363
Effective length of database: 763
Effective search space:   276969
Effective search space used:   276969
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)