BAC Information

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BAC

Clone NameMSMg01-320A14
Chromosome12 (Build37)
Map Location 52,928,121 - 52,928,326
singlet/doubletsinglet
Overlap geneHectd1
Upstream geneLOC100039517, LOC636070, LOC100039525, 6030408C04Rik, Scfd1, LOC620390, LOC100039578, Coch, Strn3, Ap4s1
Downstream geneEG544864, LOC100039476, Heatr5a, LOC676784, 6530401N04Rik, Gpr33, LOC100039627, Nubpl, Arhgap5, Akap6
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-320A14.T7 (MSMg01no320_a14.b1)MSMg01-320A14.TJ (MSMg01no320_a14.g1)
ACCAG439385AG439386
length800777
length of high quality
(start - end)
155 (237 - 391)220 (127 - 346)
definitionCHROMAT_FILE: MSMg01no320_a14.b1 PHD_FILE: MSMg01no320_a14.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:02:28 2005CHROMAT_FILE: MSMg01no320_a14.g1 PHD_FILE: MSMg01no320_a14.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:02:28 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NTTTTTTTTTTTTTTTNNNNTTTTTTATTCTCCCNGGTCCCCCGAATATC
TTTCACTCACCTATXXXXXXXXXXXXXXXXXXXXXXXXTTACACAAAAGA
GGATCCGCGGAATTTATGTTCCAAGAAAAAACTAGGAAAAAAAATACAAA
CGCAAGTAAATCTTAAATTTTTTTCCCGCAAAGAGTAAGGGTTTCTCTGT
GTAGTCTTGGCTGTCCTAAAAATCACTTTGAAGGCCAGGCTGGCCTTGGA
CTCAGAGATCTGCCTGCCTCTGCCTTCTGAGTGCTGGGACTAAAGATGTG
TGCCACCACTGCCTGACTTCAATCTTATTTTTTAAGCCTTCTATTCAAAG
CAAGGTTTAATGAATAATCAAAATAATTATCACCCTCCATGGATCAGTGA
GTCAGAGCACAGTGTTCTGCTCTTCCTGAGAATGCAAGTTCAGTTTCCAG
TGTCCTCGTTGGGTAGCAGGTCCTAAAGTAATCAAATTTTATCGTCCATG
GACACCTCGCCTCTTGTGTTCATAATTAATAATAAAAATAAATCAAAGTA
CCATCAGCCCCTAAATTCCCAACTTCATTTTACATGACCAGAGATGGATG
AATAATGGATTTTCATTCTCATTATAAGAAACCCCCACTATGGCGGTAGT
CATTGGCTGGTCTATAACAACAAAACCGTAGCAAAAATACATTTTATTCC
TTGTCCACGTAATGGGCACCATTTTCATCCTCTACAGGAAGGCCATAGAA
TGGGAAAAAATCTCTGAATATTCAACGCCCCCTCTGTTATTTTTAATTAA

GGCGCCGCGNCGCGCCTTTACCCTTCTCCCCTTTTTCCTTATAAAAACAC
TCCAATGATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXCTGCATCACCTGCCTCTGCGCCCA
CTGTGCTGACATCTTTTTCCCCCTAAAAGCTGACTTCATTTTGTGTGAAA
ACTTTGCTAGGGAACTTTAAAATACCCCTTTAGACATTTCTGCAGTTGTC
TGTGGTTAATGGAACCCTATTAATGATAATCGTGATTATGTAAATACATA
TTTGTTCAATGAGTGTGGATTATGAATACTAATACTAACCATAGCTCGGT
TGAGTCAGCTATGAACCATCTCATAAATTAAAAGACTATAAATGTCTATC
TTCTTTTTAGCTGACTTCCCAACCATGCACCTGTAGAATAAGGTCAGAAC
TACCTGATTCTTTGGTTATAAAAAAAAAAAAATTTTGGTGGGGGAGCTTC
GGTTAATACATTTCATTTTGGATATTTCCAATACTTTTTGAAGCACAGAA
GCTTCGAAATTGTGAGTGTGTGAGTGTGTATGTGAACACTTTCATATATG
CAATGATGTGCATGTGCAAAGCCACAGGACACACTTTTCGTCATCTGATC
ACTAATTTTACCATGTGTCTTCTTATTACTAAATTCTTGATCTTTTGTAT
TCGCGGTAAGTACTTTATAAACTGAACCAATCTCAATAAATCAACATTTG
GAAAAGATTCTAACTCTTTGTAATCAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no320_a14.g1 MSMg01no320_a14.g1 CHROMAT_FILE:
MSMg01no320_a14.g1 PHD_FILE: MSMg01no320_a14.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:02:28 2005
         (220 letters)



>mm_chr12_52927921_52928540
          Length = 620

 Score =  313 bits (162), Expect = 4e-90
 Identities = 195/206 (94%)
 Strand = Plus / Minus

                                                                       
Query: 1   ctgcatcacctgcctctgcgcccactgtgctgacatctttttccccctaaaagctgactt 60
           ||||||||||| |||||||||||||||||||||||||| |||||  |||   ||||||||
Sbjct: 406 ctgcatcaccttcctctgcgcccactgtgctgacatctgtttccagctatttgctgactt 347

                                                                       
Query: 61  cattttgtgtgaaaactttgctagggaactttaaaatacccctttagacatttctgcagt 120
           || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 346 cagtttgtgtgaaaactttgctagggaactttaaaatacccctttagacatttctgcagt 287

                                                                       
Query: 121 tgtctgtggttaatggaaccctattaatgataatcgtgattatgtaaatacatatttgtt 180
           ||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 286 tgtctgtggttcatggaaccctagtaatgataatcgtgattatgtaaatacatatttgtt 227

                                     
Query: 181 caatgagtgtggattatgaatactaa 206
           |||||||||||||||| |||||||||
Sbjct: 226 caatgagtgtggattaggaatactaa 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 7
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 220
Length of database: 620
Length adjustment: 9
Effective length of query: 211
Effective length of database: 611
Effective search space:   128921
Effective search space used:   128921
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)