BAC Information

Click to search

BAC

Clone NameMSMg01-320G22
Chromosome12 (Build37)
Map Location 113,006,652 - 113,189,569
singlet/doubletdoublet
Overlap geneKlc1, Xrcc3, Zfyve21, Ppp1r13b, LOC100041886
Upstream geneWdr20a, Rage, 2810455K09Rik, LOC100041649, 2810452K22Rik, 4930573I19Rik, Ankrd9, 6030440G07Rik, Rcor1, 4930595D18Rik, Traf3, Amn, Cdc42bpb, A230065H16Rik, 1200009I06Rik, Tnfaip2, Gm266, Eif5, Mark3, Ckb, 6720458F09Rik, Bag5, 2810002N01Rik
Downstream gene2010107E04Rik, BC048943, Tdrd9, A530050D06Rik, Kif26a, A730018C14Rik, A530016L24Rik, Tmem179, 2610204M08Rik, Adssl1, Siva1, Akt1, EG382639, AW555464, LOC382640, Pld4, AI450948, LOC100041194, BC022687, Cdca4, Gpr132, Jag2, Nudt14
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-320G22.T7 (MSMg01no320_g22.b1)MSMg01-320G22.TJ (MSMg01no320_g22.g1)
ACCAG439666AG439667
length775783
length of high quality
(start - end)
232 (188 - 419)143 (186 - 328)
definitionCHROMAT_FILE: MSMg01no320_g22.b1 PHD_FILE: MSMg01no320_g22.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:02:56 2005CHROMAT_FILE: MSMg01no320_g22.g1 PHD_FILE: MSMg01no320_g22.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:02:56 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(113,006,652 - 113,006,882)(113,189,427 - 113,189,569)
sequence
NNNTTTTTTTTTTTTCTCCNTCTCGAATTCCGCCCATGCACTCCAATTTC
TTNNNNCCCCTCTATAAXXXXXXXXXXXXXXXXXXXXXXXXXXTCCAAGA
GGATCCGCGGAATTCTTCTGTTTCAAGAATATTTTTGTTATGGTTATTTC
TCTGAGAACAGCTAATATTATTTTGTTTTCTCAAAGCTTAGTCATTTTAA
CCGACATAACTATGTTTTTGCATTTGTGTAGTCAGCCAAGCGAGAGAGTG
AGAGTGCACATGAGCTCATACACTTTTTCAAACGAAGTTCAAGTTCACGA
GCTATGTGTGGAGTAGGAGGCTGGCGTAGGCTAAACAGTTTTGGAGGGCA
TTTTCATACTTGTATGTTATGAAAATGAATTCTCAGGTCGTTTCATGACT
GTCAAGGTTTCCACCTACTTTTTGTTTTAGCTGACACCAGCTGATGTGAC
TCGAGTTCCCTCCGCTCTAACCAAGGCTTTTCGACATACTGACCTGCACA
CATACCTGCTATACTAACACATATTTCCCACTGCTTTCTGTTTGACAGCA
GGGGCGGGGACCAATTGTCTAACAGGCTAGAAGTCTAGACCTTCAAGGCT
TCTTCAGATGAAGAAAGGATCTTTTTGCCCCCACAAAATAATAGACTGAT
GCTACAATGGACCAAGAAAACAACTTCTGAACACACTGAATTTGTTCCGC
TTTTGTCCTTGTTTTTCTTTTTTTTCTTTTAGAGATTTAATTTATTTTGT
ATATGCCACGTCACTCTGTTTCTTG
TCCCTTNCCCCCGCCCCCTTCCCCCTTCTTCTTTTTTTCCTTTGTATATA
TAACCCCCTCTATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCTGGAGTGAAT
CTGGTCAATGTTGTCAATAGAAAGCTTTTTCCTGGCTTCAGAATATTATG
GCAGAAGGGAACAATATGGAGGATACCGAAGAGAAGATGTGCCATCAGGT
GATGACTACATGGAGGCTCGTCACAAGCTCTGGTCCTTCTCCGAAAAAGC
TCCACATGGAAACTTCTTCCCACAGCACAGTGTCTTCAAACACTCCCTTA
AAGACGGATACGGCGGTCACTGCTGATATCAGATGGTACTGAGACAATGC
AGGCAGGCACGAAGACCCGTTTATGATTTGCCCCCCCCACCCTCAGTGGT
CAAGAGCATTTGCTCTTGCAGAGGATTCTGTAAAAAAAAAAAAAAGGCAG
CTCACGGCTGTGGATCTGGTACACTCTTCTGCTCACCACAGGCACCACAT
GCATAAGATGAAAACGCCCATGTGCCATTACCTCCTGCATTTCCAAGAAT
GTGTACCCAATCTTTAGTTCCGTTGTCTAGAAGATGCCAGATCCTCCTTA
ATCGTCTTATGCTAAGAATGGCCATGTTTTAACATTGCCCTGGGAACCTA
TTACTCATCTTCCCAAGTTGGCAACATCTCTTCCTGTGATATTGCCAAGA
AACGGGTTGTTATGAACCCTCCTACAACCCCTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no320_g22.b1 MSMg01no320_g22.b1 CHROMAT_FILE:
MSMg01no320_g22.b1 PHD_FILE: MSMg01no320_g22.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:02:56 2005
         (232 letters)



>mm_chr12_113006452_113007083
          Length = 632

 Score =  424 bits (219), Expect = e-123
 Identities = 228/231 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   ttagtcattttaaccgacataactatgtttttgcatttgtgtagtcagccaagcgagaga 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ttagtcattttaaccgacataactatgtttttgcatttgtgtagtcagccaagcgagaga 260

                                                                       
Query: 61  gtgagagtgcacatgagctcatacactttttcaaacgaagttcaagttcacgagctatgt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gtgagagtgcacatgagctcatacactttttcaaacgaagttcaagttcacgagctatgt 320

                                                                       
Query: 121 gtggagtaggaggctggcgtaggctaaacagttttggagggcattttcatacttgtatgt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gtggagtaggaggctggcgtaggctaaacagttttggagggcattttcatacttgtatgt 380

                                                              
Query: 181 tatgaaaatgaattctcaggtcgtttcatgactgtcaaggtttccacctac 231
           ||||||||||||  | |||||||||||||||||||||||||||||||||||
Sbjct: 381 tatgaaaatgaacccacaggtcgtttcatgactgtcaaggtttccacctac 431


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 232
Length of database: 632
Length adjustment: 9
Effective length of query: 223
Effective length of database: 623
Effective search space:   138929
Effective search space used:   138929
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
Query= MSMg01no320_g22.g1 MSMg01no320_g22.g1 CHROMAT_FILE:
MSMg01no320_g22.g1 PHD_FILE: MSMg01no320_g22.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:02:56 2005
         (143 letters)



>mm_chr12_113189227_113189769
          Length = 543

 Score =  269 bits (139), Expect = 6e-77
 Identities = 142/143 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   cttcagaatattatggcagaagggaacaatatggaggataccgaagagaagatgtgccat 60
           ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 343 cttcagaatattagggcagaagggaacaatatggaggataccgaagagaagatgtgccat 284

                                                                       
Query: 61  caggtgatgactacatggaggctcgtcacaagctctggtccttctccgaaaaagctccac 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 283 caggtgatgactacatggaggctcgtcacaagctctggtccttctccgaaaaagctccac 224

                                  
Query: 121 atggaaacttcttcccacagcac 143
           |||||||||||||||||||||||
Sbjct: 223 atggaaacttcttcccacagcac 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 6
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 143
Length of database: 543
Length adjustment: 8
Effective length of query: 135
Effective length of database: 535
Effective search space:    72225
Effective search space used:    72225
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)