BAC Information

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BAC

Clone NameMSMg01-320K15
Chromosome12 (Build37)
Map Location 14,367,936 - 14,368,232
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC627199, LOC627189, LOC100043243, LOC100042396, LOC238091, EG633789, LOC668481, AW125753
Downstream geneLOC100043256, Map1lc3-ps7, LOC668492, LOC100042426
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-320K15.T7 (MSMg01no320_k15.b1)MSMg01-320K15.TJ (MSMg01no320_k15.g1)
ACCAG439839AG439840
length721843
length of high quality
(start - end)
297 (61 - 357)120 (74 - 193)
definitionCHROMAT_FILE: MSMg01no320_k15.b1 PHD_FILE: MSMg01no320_k15.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:03:13 2005CHROMAT_FILE: MSMg01no320_k15.g1 PHD_FILE: MSMg01no320_k15.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:03:13 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCTGTAA
TGAATTGCATCAATAATTTCAACTGGGAATGGGAATTTAAACAAAAGCTA
AGAAAATAATATAACACCACATTGTATGAATGGACCCAATAAGGTCACCT
GCTCCCATAGAATGGCAGGAGTCTGAAAGAACAAAAGTGGAGTCATGAGA
AGAAACCCCTGGGGGCGAAGTGCCATATCTTTCGAACACAGGGAGAGTGT
AGGATACAGGGGCTGTATACACAGGGAGAGTGTAGGATACAGGGGCTGTA
TAAAGCTTCTGAGAGATAGAATAGACAGGTGACCCCAGGGACTGCAGGAG
GGATTTATTTCTTCCAATACTGACATCAGGCCTGATCCAACCTGCAGATT
CTAGAAGCCTAAGATAGCCATTCTTTGTGGTTTCAAGCCACTGACTTCTT
GGTGATTCGTTATAGTTGCAACAGATAACTATTGTCAGTGGCTACTAACA
CTTAAAACTCAAAGTTATTAAATGCCTTTGAAAGAATCAGCCACATGCTG
TAGAGACCACCAAAGTAAATGTAATTCCTCAGCCCACAGTTTCCAACAGA
ATATGAAAAGATCCACTTAACAGAATTAAAGTGATGGCAGTGCCAATGTC
TTAAATAAACTCCCTTTAATTCCCCTAATATCCTCCATTATTAACGTCCT
TCTCAAAATTTTTTCTAGCTC
CGATGACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXTTTCTCTCTCTCTCTCTCTCTCTCTCT
CTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTTTCTCACTCATT
TGTGCTCACTTGCTCTCTGACATGTTGTGAGAATTTTGAGGTGTGGACAG
GACAGGAGATCTTTGTTCTAGGTTATCTCTGAAGCCAGTTTTCTTACTTC
TATGGCTAGTCTAGGCTGCCTATATCAACTTTCTCAATTTGAGTTGCTCA
TGAGCTCCCCATCCATTTTGCTATTTTCTAAAGATAATGGATGGATTGAC
TCTGCTTGCTTTTTTTTTTTTAAGACCCCCCCCCCCCCCTTGTGAAAATT
TCAGTTGCATGAAAAGTAGCTAAACTGTAATAATTTAAGAAAAAGCTCAT
TACCCGTTTGCGGGTTAGGCATATTTATATATCGGGTTTATCGGGCGAAA
TAGGTTTGGCGTTATTTACCCCCGAATCGCTCCACAGCAATACTGTTGCA
CTTCCTGCCGTAGTTTTTAACACAATGTTTTTCATGGTAATGAAGTTCCA
CTTTTACTTCGGATTGCATGCATTTCCCAATATGGGGTGCGCGAATTCGA
TTGAACTCTTTCTGCTGAGATAATACTTATGGTCTTAACGAGTTGGCTGG
TTGGTTCGGTCTGTGGTTTAAATTTAATATCCACCTTTGGTAATAGTAAA
TAATTGCCACCACATCCGGGACAACGATTTTATTTTTTTTCCCCCGACCC
TTTTTGCACACTTCCGACAGTCTCGGAATCTATATTATCACAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no320_k15.b1 MSMg01no320_k15.b1 CHROMAT_FILE:
MSMg01no320_k15.b1 PHD_FILE: MSMg01no320_k15.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:03:13 2005
         (297 letters)



>mm_chr12_14367736_14368432
          Length = 697

 Score =  528 bits (273), Expect = e-154
 Identities = 291/297 (97%)
 Strand = Plus / Minus

                                                                       
Query: 1   caataatttcaactgggaatgggaatttaaacaaaagctaagaaaataatataacaccac 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||
Sbjct: 497 caataatttcaactgggaatgggaatttaaacaaaagctaagaaaataataaaacaacac 438

                                                                       
Query: 61  attgtatgaatggacccaataaggtcacctgctcccatagaatggcaggagtctgaaaga 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 437 attgtatgaatggacccaataaggtcacctgctcccatagaatggcaggagtctgaaaga 378

                                                                       
Query: 121 acaaaagtggagtcatgagaagaaacccctgggggcgaagtgccatatctttcgaacaca 180
           |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 377 acaaaagtggagtcatgagaagaaacccctggggtcgaagtgccatatctttcgaacaca 318

                                                                       
Query: 181 gggagagtgtaggatacaggggctgtatacacagggagagtgtaggatacaggggctgta 240
           ||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 317 gggatcgtgtaggatacaggggctgtatacacagggagagtgtaggatacaggggctgta 258

                                                                    
Query: 241 taaagcttctgagagatagaatagacaggtgaccccagggactgcaggagggattta 297
           ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 257 taaagcttctgggagatagaatagacaggtgaccccagggactgcaggagggattta 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 297
Length of database: 697
Length adjustment: 9
Effective length of query: 288
Effective length of database: 688
Effective search space:   198144
Effective search space used:   198144
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)