BAC Information

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BAC

Clone NameMSMg01-321E05
Chromosome12 (Build37)
Map Location 59,050,198 - 59,050,536
singlet/doubletsinglet
Overlap genenone
Upstream geneSlc25a21, AU021838, LOC100040044, Foxa1, 4921506M07Rik, EG217600, BC042761
Downstream geneSstr1, Clec14a, LOC100040183
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-321E05.T7 (MSMg01no321_e05.b1)MSMg01-321E05.TJ (MSMg01no321_e05.g1)
ACCAG440277AG440278
length733737
length of high quality
(start - end)
686 (44 - 729)341 (75 - 415)
definitionCHROMAT_FILE: MSMg01no321_e05.b1 PHD_FILE: MSMg01no321_e05.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:03:58 2005CHROMAT_FILE: MSMg01no321_e05.g1 PHD_FILE: MSMg01no321_e05.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:03:58 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAA
TTCTTTGTTTCCCTCTGAGCCCCATTTTTTAATGGGGTTATTTGATTTTC
TGAAGTCCACCTTCTTGACTTCTTTATATATGTTGGATATTAGTCCCCTA
TCTGATTTAGGATAGGTAAAGATCCTTTCCCAATCTGTTGGTGGTCTTTT
TGTCCTATTGACGGTGTCTTTTGCCTTGCAGAAACTTTGGAGTTTCATTA
GGTCCCATTTGTCAATTCTCGATCTTACAGAGCAAGCCATTGCTGTTCTG
TTCAGGAATCTTTCCCCTGTACCCATATCTTCAAGACTTTTCCCCACTTT
CTCCTCTATAAGTTTCAGTGTCTCTGGTTTTATGTGAAGTTCCTTGATCC
ACTTAGATTTGACCTTACTACAAGGAGATAAGTATGGATCGATTCGCATT
CTTCTACATGATAACAACCAGTTGTGCCAGCACCAATTGTTGAAAATGCT
GTCTTTCTTCCACTGGATGGTTTTAGCTCCCTTGTCAAAGATCAAGTGAC
CATAGGTGTGTGGGTTCATTTCTGGGTCTTCAATTCTATTCCATTGGTCT
ACTTGTCTGTCTCTATACCAGTACCATGCAGTTTTTATCACAATTGCCCT
GTAGTAAAGCTTTAGGTCAGGCATGGTGATTCCACCAGAGGTTCTTTTAT
CCTTGAGAAGAGTTTTTGCTATCCTAGGTTTTT
ATGACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXCATTTTGAAAATGAGAAAATTGCCTA
TATATGGCTTTAAGAAATATAATCCTTGTGCTGAAAGAGATCCTAAAGTT
AATTTCTTTGAGAACCTTATTTCATACTTTGTTTTGCTTTTTATCCTTTT
ATGTGCCCATGTGTGTGGTGTTGTGTGTGTCCATGACTGTGTTTGCATAC
ATATGGAAACATGTGTGTGTGTTAATTTAAACATATGGCTCTTAGCATGT
TGACCTTATTCCAGTGGATGATCCCACATTCAGAAATATGTTGAGACCAC
AAACTGCAGGTGATGGATTAATATATATATGAGAGAACGTGAAGTTGGGG
GGATAAAAAGGCAACACCCGAGGTGTGTATACATATGTACTCACCTGATA
GCTGGCTCTAGGAGTCCCCTATCTTCTCTTACCAACCCTCTCCTTTGCAA
GGCAAGCGCTAAGCCAGCCCTACCCACCCAGCACCACCTCATATATTTTC
CACAGGTTGTGCGACTTTTCCATAGTCCTGTGGGCTAGGCGTTTAGAACA
CCCAAGGTTTTCACCTGCAGCCCTTTTGGTTAAACCATGCTAATTCGCCA
CTTAAATGCTAACCTTGCCACCTCTGAAATTCCACTCTTTCATATCCCGC
GCCCAATTAACCCTCTTCTATTTACTTGACCACCCCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no321_e05.g1 MSMg01no321_e05.g1 CHROMAT_FILE:
MSMg01no321_e05.g1 PHD_FILE: MSMg01no321_e05.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:03:58 2005
         (341 letters)



>mm_chr12_59050134_59050876
          Length = 743

 Score =  594 bits (307), Expect = e-174
 Identities = 331/339 (97%), Gaps = 2/339 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   cattttgaaaatgagaaaattgcctatatatggctttaagaaatataatccttgtgctga 60
           ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 403 cattttgaaaatgagaaaattgcctatatctggctttaagaaatataatccttgtgctga 344

                                                                       
Query: 61  aagagatcctaaagttaatttctttgagaaccttatttcatactttgttttgc-ttttta 119
           ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 343 aagagatcctaaagttaatttctttgagaaccttatttcatactttgttttgctttttta 284

                                                                       
Query: 120 tcc-ttttatgtgcccatgtgtgtggtgttgtgtgtgtccatgactgtgtttgcatacat 178
           ||| |||| |||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 283 tcctttttgtgtgcccatgtgtgtggtcttgtgtgtgtccatgactgtgtttgcatacat 224

                                                                       
Query: 179 atggaaacatgtgtgtgtgttaatttaaacatatggctcttagcatgttgaccttattcc 238
           ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 223 atgtaaacatgtgtgtgtgttaatttaaacatatggctcttagcatgttgaccttattcc 164

                                                                       
Query: 239 agtggatgatcccacattcagaaatatgttgagaccacaaactgcaggtgatggattaat 298
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 163 agtggatgatcccacattcagaaatatgttgagaccacaaactgcaggtgatggattaat 104

                                                  
Query: 299 atatatatgagagaacgtgaagttggggggataaaaagg 337
           |||||||||||| ||| ||||||||||||||||||||||
Sbjct: 103 atatatatgagaaaacatgaagttggggggataaaaagg 65


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 341
Length of database: 743
Length adjustment: 9
Effective length of query: 332
Effective length of database: 734
Effective search space:   243688
Effective search space used:   243688
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)