ATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAAT
TCAGTGTCTCCCTACATCAATATCTAATTTTAACCTTTTAGTTATTTAAT
GTAATACTAATATGCACCCTGTAGCAGATAACTATTATATAAAAATATAT
TCAATTGTGAGATCAGCAACATCATTATATAATTCTGAAATATTTTATTT
ATTCAAAAATATAACTTTTGTAAAGGAGGATTCTTGTGTAGGTATAAAAT
AACATTTGTATGTTAAATGATGTAACCAGACAAAATTTAGTCTTTGTTCA
AAAGAAAATATATACTACACACTATAGAATATTAATACAAATGTTCAAAG
AGAAGATTTATTTGCCTCGCCCCTACGGATGTGTGGAAGGTATATGTAAC
ATTCTACCTCTATGGCTAAGAATAATGTTACATTTCTTCAAAGCTTTTTA
TTTTTTTATTGACAGAATAGCTTGTAGTACAGACTTATCTAGTATCTAGA
GCCTATTTTATATTTACAGAATCATGTGTTTTCTTACAGTTTATTAATAC
CTTTTTGCATCCTTTTATATATGTTTAATCTCAGAGTAATAACATTATTG
TGAAACAATTACTCTAGCCTATATGATAAATTTATTTCCACCAAAGGTCA
AAAATAAATGATGGATATGAAAATATCTGAATTTGTGTCTGCAGCACCCC
TGCAGATGAGCAAATATATTATCCTATAAACCAGCTN

TGACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXAGGAATTATTAAAGATCTCCATTTGCC
CATGACCACCAGAACTCCATTATCCCAACTCTCCTCTCCTTTATTGCTTT
GTAATTTCTGTTCATCTCCCATTCACCTTCATTTTGGCTGTTACTTCTAA
TGCCAAGTCATTTGATCAATCATTATCCTTGATCTTACTTTGCTGGCTCT
CAATTCCATTGTCTGGACTGATTTATTACCTTCCTGGCTTTAGAATGGCC
AGGCTCAGTCCTTCTTACACTGCCTCTACAATTTCTAAAGTAAAATGCCC
AAATCACTTGATGTTCTTCCCTTGACTTGAAAGGGTCTATAGGAAAGGTA
TCTAAATCCATATGGCAGCATATTCAACCTCAGCTCTAAGCATATTTTAT
ATTACCTTATTTTTGTTCTGTGAATTGCCTAGTGAAATTAGACTGGGTAT
TAGGATGCAATCCTCTACAACTTCCTGCAGTTGTGACAAATAAAACATTT
TCACCAGGGTAAGCCAATCATCCCTATGAAGGCATAAGAGGGTGAGAATA
GGAAGGCATATTGATTTTATAAATTCAATGTTGCTGACAAGTCACAGTAT
TTCTGAAGTTTGTACATAGTGTAAGAAACAAGAAATGCAAGACATTCTTA
CTAAATGCACAGTATAGTATTGAGATGAACCTA

Query= MSMg01no321_i11.b1 MSMg01no321_i11.b1 CHROMAT_FILE:
MSMg01no321_i11.b1 PHD_FILE: MSMg01no321_i11.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:04:17 2005
         (301 letters)



>mm_chr12_38276952_38277652
          Length = 701

 Score =  503 bits (260), Expect = e-147
 Identities = 281/288 (97%)
 Strand = Plus / Minus

                                                                       
Query: 1   aatatctaattttaaccttttagttatttaatgtaatactaatatgcaccctgtagcaga 60
           ||||||||||||||||||||||| ||||||||||||||||||||||||   |||||||||
Sbjct: 488 aatatctaattttaaccttttagctatttaatgtaatactaatatgcagtttgtagcaga 429

                                                                       
Query: 61  taactattatataaaaatatattcaattgtgagatcagcaacatcattatataattctga 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 428 taactattatataaaaatatattcaattgtgagatcagcaacatcattatataattctga 369

                                                                       
Query: 121 aatattttatttattcaaaaatataacttttgtaaaggaggattcttgtgtaggtataaa 180
           ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 368 aatattttatttattcaaaaatataacttttataaaggaggattcttgtgtaggtataaa 309

                                                                       
Query: 181 ataacatttgtatgttaaatgatgtaaccagacaaaatttagtctttgttcaaaagaaaa 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 308 ataacatttgtatgttaaatgatgtaaccagacaaaatttagtctttgttcaaaagaaaa 249

                                                           
Query: 241 tatatactacacactatagaatattaatacaaatgttcaaagagaaga 288
           |||| || ||||||||||||||||||||||||||||||||||||||||
Sbjct: 248 tatagacaacacactatagaatattaatacaaatgttcaaagagaaga 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 301
Length of database: 701
Length adjustment: 9
Effective length of query: 292
Effective length of database: 692
Effective search space:   202064
Effective search space used:   202064
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no321_i11.g1 MSMg01no321_i11.g1 CHROMAT_FILE:
MSMg01no321_i11.g1 PHD_FILE: MSMg01no321_i11.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:04:17 2005
         (557 letters)



>mm_chr12_38119996_38120952
          Length = 957

 Score = 1046 bits (541), Expect = 0.0
 Identities = 553/557 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   aggaattattaaagatctccatttgcccatgaccaccagaactccattatcccaactctc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aggaattattaaagatctccatttgcccatgaccaccagaactccattatcccaactctc 260

                                                                       
Query: 61  ctctcctttattgctttgtaatttctgttcatctcccattcaccttcattttggctgtta 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ctctcctttattgctttgtaatttctgttcatctcccattcaccttcattttggctgtta 320

                                                                       
Query: 121 cttctaatgccaagtcatttgatcaatcattatccttgatcttactttgctggctctcaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 cttctaatgccaagtcatttgatcaatcattatccttgatcttactttgctggctctcaa 380

                                                                       
Query: 181 ttccattgtctggactgatttattaccttcctggctttagaatggccaggctcagtcctt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ttccattgtctggactgatttattaccttcctggctttagaatggccaggctcagtcctt 440

                                                                       
Query: 241 cttacactgcctctacaatttctaaagtaaaatgcccaaatcacttgatgttcttccctt 300
           |  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 caaacactgcctctacaatttctaaagtaaaatgcccaaatcacttgatgttcttccctt 500

                                                                       
Query: 301 gacttgaaagggtctataggaaaggtatctaaatccatatggcagcatattcaacctcag 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 gacttgaaagggtctataggaaaggtatctaaatccatatggcagcatattcaacctcag 560

                                                                       
Query: 361 ctctaagcatattttatattaccttatttttgttctgtgaattgcctagtgaaattagac 420
           |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 561 ctctaagcatattttatattaccttaattttgttctgtgaattgcctagtgaaattagac 620

                                                                       
Query: 421 tgggtattaggatgcaatcctctacaacttcctgcagttgtgacaaataaaacattttca 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 tgggtattaggatgcaatcctctacaacttcctgcagttgtgacaaataaaacattttca 680

                                                                       
Query: 481 ccagggtaagccaatcatccctatgaaggcataagagggtgagaataggaaggcatattg 540
           |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 ccagagtaagccaatcatccctatgaaggcataagagggtgagaataggaaggcatattg 740

                            
Query: 541 attttataaattcaatg 557
           |||||||||||||||||
Sbjct: 741 attttataaattcaatg 757


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 557
Length of database: 957
Length adjustment: 10
Effective length of query: 547
Effective length of database: 947
Effective search space:   518009
Effective search space used:   518009
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)