BAC Information

Click to search

BAC

Clone NameMSMg01-321J18
Chromosome12 (Build37)
Map Location 112,743,511 - 112,912,453
singlet/doubletdoublet
Overlap geneEif5, Mark3, Ckb
Upstream genePpp2r5c, 9430024F10Rik, Dync1h1, 1700001K19Rik, Hsp90aa1, Wdr20a, Rage, 2810455K09Rik, LOC100041649, 2810452K22Rik, 4930573I19Rik, Ankrd9, 6030440G07Rik, Rcor1, 4930595D18Rik, Traf3, Amn, Cdc42bpb, A230065H16Rik, 1200009I06Rik, Tnfaip2, Gm266
Downstream gene6720458F09Rik, Bag5, 2810002N01Rik, Klc1, Xrcc3, Zfyve21, Ppp1r13b, LOC100041886, 2010107E04Rik, BC048943, Tdrd9, A530050D06Rik, Kif26a, A730018C14Rik, A530016L24Rik, Tmem179, 2610204M08Rik, Adssl1, Siva1, Akt1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-321J18.T7 (MSMg01no321_j18.b1)MSMg01-321J18.TJ (MSMg01no321_j18.g1)
ACCAG440533AG440534
length733735
length of high quality
(start - end)
291 (74 - 364)291 (440 - 730)
definitionCHROMAT_FILE: MSMg01no321_j18.b1 PHD_FILE: MSMg01no321_j18.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:04:23 2005CHROMAT_FILE: MSMg01no321_j18.g1 PHD_FILE: MSMg01no321_j18.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:04:23 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(112,912,163 - 112,912,453)(112,743,511 - 112,743,801)
sequence
ATCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCCGAGGATCCGCGG
AATTCCTGTCATATTCCCACACAGTTCGCTCCTCCAGGCAGCCTGCCTCC
AGAGAAAGGCAGGGTCCCTGTGCCTCCTGTGCACTTTTTGTTGCACGTTC
CTTGCATCTAGCACCTCATGTGTGGCTGGAGGCTCAGGGGGAGCAGTCTC
CCTCAAAGCCATCTTCAGCTTCTTTTCCTCTGGGGCGTAAGTGTGCCATT
AGTTCTCTGAAGCTAGGCTTTGGACTGCAATCCCTCAGAGCAGGATGGAG
CATGCCTTTAAGTCCACAAGTGTATAAACAGAGGCAGGCAGAGCTCTGAG
ACCTGCTTGGTCTATTAGTGAGTCCCACCGCTACAGAGAGAAACTGTCAA
AGACAAATGACTGATTATCCCCCCCCCCACAAGCAAGGATGAAGGCTTCT
CTTGTTCTTGCTTTATTAGCCCAGGAGTGAGTGAGTGGCTGTGAGTGAAC
ATTAAATATGAAAGCACAGATACTGATTTTTTTTTGAGACAGGGCTGTTC
TGGACTCTCTTTTTATAGGAAGGATCTGCCTGAGGGATCTCACAGAGATC
TGCTTGTCTCTGCCTTCCTCGTGCTTGGATTGAAAGGTAGTGCTGCATCT
GGACGTTGTGTCCCATGCCTTTAATCCCAGCACTTGTGATGCATATTTAG
TCTAATTTCCGAGTTCCAGTCCTTTCTGATTTT
ACGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTTCCCTGGTCCCACACTCCAGCCC
AGAACGACTTCTTACACCTACCCACAGAATTGGATCTCGACTCCTGGAAG
ATAATCCCAGGGAAGCGCCATCTCCCAGCAGAGCAGCCAACAGCTGGCAA
TAGCTAGAAACCACCAGCACTCAGAGATCACAGCCAGGTTCGCCACCTAG
CGGTGATGGGTTGAAGCATCTGTGGGGTTTGGCTCACTGTCAACCTGGCC
GGGACTTGGTCCAGGGAAACTCATTAAAGCTGGGCTGTGTCTTAGGCTTG
GAGGGAAGGGAAGTTTTTTTGGAACCCCCCCCCCCCCCCACAGGACAGTG
GACATCAAAAGACTCGGAATTCCCCCCCCAAAAACCCTCTGGGGAAGAAC
AAAGACAGAAATGACAGTTCTTAGCACTTTCTGGCACTGTGAAGGTTCAG
AAAATGATGCCATCATAGTCTCACAAGAACCCACACAGACAACTAGTGTG
TTGGCTTCTCACCATTCACTCTAACCTTTAGCAAGGCACACATTTATCAA
CTGCGATTCAATACACACCCACAAGTTTGAATGAGACCTCCACCCTTATG
GACCTTCTGAAGGATTGTTTTGCTTTGTTCTATTATATGTAAGTACACTG
TAGCTGTCTTCAAACACTCCAGAAGAGGGCATCAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no321_j18.b1 MSMg01no321_j18.b1 CHROMAT_FILE:
MSMg01no321_j18.b1 PHD_FILE: MSMg01no321_j18.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:04:23 2005
         (291 letters)



>mm_chr12_112912040_112912730
          Length = 691

 Score =  547 bits (283), Expect = e-160
 Identities = 289/291 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   gttcgctcctccaggcagcctgcctccagagaaaggcagggtccctgtgcctcctgtgca 60
           |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 414 gttcgctcctccaggcagcctgcctccacagaaaggcagggtccctgtgcctcctgtgca 355

                                                                       
Query: 61  ctttttgttgcacgttccttgcatctagcacctcatgtgtggctggaggctcagggggag 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 354 ctttttgttgcacgttccttgcatctagcacctcatgtgtggctggaggctcagggggag 295

                                                                       
Query: 121 cagtctccctcaaagccatcttcagcttcttttcctctggggcgtaagtgtgccattagt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 294 cagtctccctcaaagccatcttcagcttcttttcctctggggcgtaagtgtgccattagt 235

                                                                       
Query: 181 tctctgaagctaggctttggactgcaatccctcagagcaggatggagcatgcctttaagt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 234 tctctgaagctaggctttggactgcaatccctcagagcaggatggagcatgcctttaagt 175

                                                              
Query: 241 ccacaagtgtataaacagaggcaggcagagctctgagacctgcttggtcta 291
           ||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 174 ccacaagtggataaacagaggcaggcagagctctgagacctgcttggtcta 124


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 291
Length of database: 691
Length adjustment: 9
Effective length of query: 282
Effective length of database: 682
Effective search space:   192324
Effective search space used:   192324
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
Query= MSMg01no321_j18.g1 MSMg01no321_j18.g1 CHROMAT_FILE:
MSMg01no321_j18.g1 PHD_FILE: MSMg01no321_j18.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:04:23 2005
         (291 letters)



>mm_chr12_112743311_112744001
          Length = 691

 Score =  547 bits (283), Expect = e-160
 Identities = 289/291 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   tggggaagaacaaagacagaaatgacagttcttagcactttctggcactgtgaaggttca 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tggggaagaacaaagacagaaatgacagttcttagcactttctggcactgtgaaggttca 260

                                                                       
Query: 61  gaaaatgatgccatcatagtctcacaagaacccacacagacaactagtgtgttggcttct 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gaaaatgatgccatcatagtctcacaagaacccacacagacaactagtgtgttggcttct 320

                                                                       
Query: 121 caccattcactctaacctttagcaaggcacacatttatcaactgcgattcaatacacacc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 caccattcactctaacctttagcaaggcacacatttatcaactgcgattcaatacacacc 380

                                                                       
Query: 181 cacaagtttgaatgagacctccacccttatggaccttctgaaggattgttttgctttgtt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 381 cacaagtttgaatgagacctccacccttatggaccttctgaaggattgttttgttttgtt 440

                                                              
Query: 241 ctattatatgtaagtacactgtagctgtcttcaaacactccagaagagggc 291
            ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ttattatatgtaagtacactgtagctgtcttcaaacactccagaagagggc 491


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 291
Length of database: 691
Length adjustment: 9
Effective length of query: 282
Effective length of database: 682
Effective search space:   192324
Effective search space used:   192324
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)