Query= MSMg01no321_k04.b1 MSMg01no321_k04.b1 CHROMAT_FILE:
MSMg01no321_k04.b1 PHD_FILE: MSMg01no321_k04.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:04:25 2005
(362 letters)
>mm_chr12_99826754_99827515
Length = 762
Score = 665 bits (344), Expect = 0.0
Identities = 354/362 (97%), Gaps = 8/362 (2%)
Strand = Plus / Minus
Query: 1 ccccagtgatcagttttaaagcacacacacacacacacacacacacacacacacacacac 60
||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 621 ccccagtgatcagttttaaag--------cacacacacacacacacacacacacacacac 570
Query: 61 acacacatggccagggaaacaaatgagacaatctaagtttcaaaacgtggcccagaaaat 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 569 acacacatggccagggaaacaaatgagacaatctaagtttcaaaacgtggcccagaaaat 510
Query: 121 tccatttgtctgtgattacttttatattgttaggtttcatcttgccatttaaataacccg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 509 tccatttgtctgtgattacttttatattgttaggtttcatcttgccatttaaataacccg 450
Query: 181 atgtataatcctggaattaaattcctgtcgtattcctttatattagaaaggagttcagag 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 449 atgtataatcctggaattaaattcctgtcgtattcctttatattagaaaggagttcagag 390
Query: 241 taaagtatctggaactatccgttccttatatttgaatcggagagttttaattttgctttg 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 389 taaagtatctggaactatccgttccttatatttgaatcggagagttttaattttgctttg 330
Query: 301 tccccaaaataaaaaaggcaacagcgctgtgtctgatgcaatgtagactcaaaaatgtgc 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 329 tccccaaaataaaaaaggcaacagcgctgtgtctgatgcaatgtagactcaaaaatgtgc 270
Query: 361 ag 362
||
Sbjct: 269 ag 268
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 54
Number of extensions: 15
Number of successful extensions: 15
Number of sequences better than 10.0: 1
Number of HSP's gapped: 7
Number of HSP's successfully gapped: 1
Length of query: 362
Length of database: 762
Length adjustment: 9
Effective length of query: 353
Effective length of database: 753
Effective search space: 265809
Effective search space used: 265809
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no321_k04.g1 MSMg01no321_k04.g1 CHROMAT_FILE:
MSMg01no321_k04.g1 PHD_FILE: MSMg01no321_k04.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:04:25 2005
(668 letters)
>mm_chr12_99653273_99654340
Length = 1068
Score = 1226 bits (634), Expect = 0.0
Identities = 660/674 (97%), Gaps = 12/674 (1%)
Strand = Plus / Plus
Query: 1 actgccctcctccttctgaattattgtcttaaacaacacaaaaccctctgagataatttg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 actgccctcctccttctgaattattgtcttaaacaacacaaaaccctctgagataatttg 260
Query: 61 ctccgcctcccctgtacactcttagcatgatgtctgacttgtgtttttcaaacttttaat 120
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ctccgcctccactgtacactcttagcatgatgtctgacttgtgtttttcaaacttttaat 320
Query: 121 gtgcgtgagatgcacctggagagccagggaagaggaaaccttctggtcctgggttgggcc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gtgcgtgagatgcacctggagagccagggaagaggaaaccttctggtcctgggttgggcc 380
Query: 181 ctaggatttagggtttctaatgcacaccctcatgatgctgcaatgacgcttgttccataa 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ctaggatttagggtttctaatgcacaccctcatgatgctgcaatgacgcttgttccataa 440
Query: 241 tccaactttaggggccaagaaccttgtcctctccagccttggcaccccactgttggaggt 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tccaactttaggggccaagaaccttgtcctctccagccttggcaccccactgttggaggt 500
Query: 301 acttcattcaagccacttgtgcctgacgttatcaacccacccc---aaagaaaatgtaag 357
||||||||||||||||||||||||||||||||||| ||| ||||||||||||||
Sbjct: 501 acttcattcaagccacttgtgcctgacgttatcaagcca----ggtaaagaaaatgtaag 556
Query: 358 ctgctggcgaagagcttaccccaaaccagtaaataccatgaaagcaaaccaaagccctct 417
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 557 ctgctggcgaagagcttaccccaaaccagtaaataccatgaaagcaaaccaaagccctct 616
Query: 418 gtatcctgagcatttggccaaaaagaggggaggggaagagagaacctgagagtcatggaa 477
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 617 gtatcctgagcatttggccaaaaagaggggaggggaagagagaacctgagagtcatggaa 676
Query: 478 ggaaaaacacacccaaattcattataaaaattcactctgaagtaggggagggggcatgtt 537
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 677 ggaaaaacacacccaaattcattataaaaattcactctgaagtaggggagggggcatgtt 736
Query: 538 ctttagtgaagcctgaagaaaagcatctccaaccc---ccccccaaaaaaaacagacagc 594
||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||
Sbjct: 737 ctttagtgaagcctgaagaaaagcatctccaaccctccccccccaaaaaa--cagacagc 794
Query: 595 aaataaaactaaaacagagctgtttatttccttaactacgttctcccgaaatccaaaacc 654
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 795 aaataaaactaaaacagagctgtttatttccttaactacgttctcccgaaatccaaaacc 854
Query: 655 ttgagggcaagcag 668
||||||||||||||
Sbjct: 855 ttgagggcaagcag 868
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 668
Length of database: 1068
Length adjustment: 10
Effective length of query: 658
Effective length of database: 1058
Effective search space: 696164
Effective search space used: 696164
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
