Query= MSMg01no321_n04.b1 MSMg01no321_n04.b1 CHROMAT_FILE:
MSMg01no321_n04.b1 PHD_FILE: MSMg01no321_n04.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:04:39 2005
(295 letters)
>mm_chr12_54511383_54512076
Length = 694
Score = 532 bits (275), Expect = e-155
Identities = 290/297 (97%), Gaps = 5/297 (1%)
Strand = Plus / Minus
Query: 1 gaaactgggcagttccctgtgtggtccaggagcataaaggcattcctgcaccgcctgatg 60
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 494 gaaactgggcagttccctgtgtggtccaggagcataaaggcattcctgcacagcctgatg 435
Query: 61 ctgttgccatggggccactcacacaaacaggaaataatcagagctggaaccaaactgcca 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 434 ctgttgccatggggccactcacacaaacaggaaataatcagagctggaaccaaactgcca 375
Query: 121 cccttcctaggtgggaaaaacaaatctgtctttcttactacattgttattaatacattgg 180
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 374 cccttcctaggtgggaaaaacaaatctgtcttgcttactacattgttattaatacattgg 315
Query: 181 tataaccatgtcatttgtgaacaggagaatctaacttctaagaataaaacacactggttc 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 314 tataaccatgtcatttgtgaacaggagaatctaacttctaagaataaaacacactggttc 255
Query: 241 atggtccaca--ggtttgagctgagggttgtttcaaagtagacctccttactctcca 295
|||||||||| || ||||||||||||||||||||||||||||||||||||||||
Sbjct: 254 atggtccacagggg---gagctgagggttgtttcaaagtagacctccttactctcca 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 295
Length of database: 694
Length adjustment: 9
Effective length of query: 286
Effective length of database: 685
Effective search space: 195910
Effective search space used: 195910
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no321_n04.g1 MSMg01no321_n04.g1 CHROMAT_FILE:
MSMg01no321_n04.g1 PHD_FILE: MSMg01no321_n04.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:04:39 2005
(293 letters)
>mm_chr12_54346863_54347555
Length = 693
Score = 559 bits (289), Expect = e-164
Identities = 292/293 (99%)
Strand = Plus / Plus
Query: 1 agttttaacctcattccttagtctttcgctggattttctttggttacaacattgctggcc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 agttttaacctcattccttagtctttcgctggattttctttggttacaacattgctggcc 260
Query: 61 ttaacccaggtagaaatgctctaaaacatccctgccctctccagaatgggtaggaagtct 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ttaacccaggtagaaatgctctaaaacatccctgccctctccagaatgggtaggaagtct 320
Query: 121 ctgtctcagtagaaagcctgcacagagcaaagggctggtatctgaaatcctttcagagct 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ctgtctcagtagaaagcctgcacagagcaaagggctggtatctgaaatcctttcagagct 380
Query: 181 tatccaaaggttgacaaggcaaggaggtcagagctttgggctgagtgagggccaaggtcc 240
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 381 tatccaaaggttgacaaggcaaggaggtcagaactttgggctgagtgagggccaaggtcc 440
Query: 241 ccctgtaggggtccttaagatgctggtttccaccagccccgcctcgcactgcg 293
|||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ccctgtaggggtccttaagatgctggtttccaccagccccgcctcgcactgcg 493
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 293
Length of database: 693
Length adjustment: 9
Effective length of query: 284
Effective length of database: 684
Effective search space: 194256
Effective search space used: 194256
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
