BAC Information

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BAC

Clone NameMSMg01-322A20
Chromosome12 (Build37)
Map Location 36,102,414 - 36,102,772
singlet/doubletsinglet
Overlap genenone
Upstream geneHdac9, 4921508M14Rik, Prps1l1, Snx13
Downstream geneAhr, LOC100043575, LOC629758, LOC100043579, LOC669866, Agr3, Agr2, Tspan13, EG432649, Bzw2, Ankmy2, 1700108M19Rik, Sostdc1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-322A20.T7 (MSMg01no322_a20.b1)MSMg01-322A20.TJ (MSMg01no322_a20.g1)
ACCAG440855AG440856
length743751
length of high quality
(start - end)
655 (47 - 701)360 (392 - 751)
definitionCHROMAT_FILE: MSMg01no322_a20.b1 PHD_FILE: MSMg01no322_a20.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:04:56 2005CHROMAT_FILE: MSMg01no322_a20.g1 PHD_FILE: MSMg01no322_a20.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:04:56 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCATGAAATTTTTCCGCAAATGGATAGAAATAGAAAAATATCATCCT
GAGTGAGGCAACCCAGTCACAAAAGAACACACATGATATGTACTCACTGA
TAAAAGGATATTAGCTCAGAAACTTAGTATATCCAAGATACAATTTGCAA
ATCACATGGAACTCAAGAAGAAGGAAGACCAAAGTGTGGATACTTTGCTC
CTTCTTAGAACGGGGAGCAAACTACCCATGGAAGTAGTTACAGAGACAAA
GTTCAGAGCTGAAATAGAAGGAATGATTATCCAAAGACTGCCCTACTTGG
GGATCCATCCCATATACAACCACCAAACCCAGACACTATTGTATATGCCA
ACAAGATTTTGCTGACAGGACCCTGACGTAGCTCTCTCTTGTGAGGCTAT
GCCAGTGCCTGGCAAATACAGAAATGGTTACTCACAGTCATCTTTGGATG
GAACACAGGGCCCCTAATGAAGGAGCTAGAGAAAGTACCAAAGGAGCTAA
AGGGGTCTGCAACCCTATAGGGGGAAAAACAATATGAACTAACCAGTACC
CTACAGAACTGTGTCTCTAGTTGAATATGTAGCAGAGGATGGAAGGAAAG
GCCTTTGGTCTTATGAACACCATATGCCCCAGTACAGGGGAATTCCAGGG
TCAGGAAACAGGTGTTGGGGAGCAAGGTGGCAGGAGGGTATAG
ACGATGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXACAGAAATAAGAGCCAGAAGTCA
TAAGGTGAATTTGTGAGTTTGGTGAGACATTAAGTATATTTTAATTCCTT
AATATTTATATAAAGAGCATTTCAGGTTTCAATATTAAACAAACTATCCA
AATTTCAAAAAAAGAAACAAAGCAAATGACTGAAGATTTGCTTTCAATGA
TTAGTGCTAGGAAACAATAGAAAACTAAAAATAACTACATCTAAGCACTT
AAATTTACAATTTACCTAGTTACACTTACACAAAGAAGGAAAAGTACACC
AGACATAGGATTAAAGAATCTTATATCTAACCTTCCTACCATTTATTTTT
TAAAAAGAGAAGTGGATCACATGCCCCCCCAAATTATTTATAAAGATTCA
AGATGGACAAATAAGACACCTAGCACTCACCTCTTCTTTCCCCAAAGAAC
CAAAATAATAGACACACATGTGGTTGTGTTTTTGAGGTTAGTGACCAGAG
GGGAACACAGTAAACAAGACAGAGCCTAGACTATTGCAAGACTTAGAAAA
CTTAGCCTATTAGTGATAACACCACAGACAGAGAAACAAAAATTCCCTAG
GACTGCCATCACGGTTCCAAAGCCAGGGGACGGTGAATTTCCTTCTCAAA
GGTCAGGGTGAAAGAGAAAGTTCCAGAAAACACCACCAGTGAGGAAACTG
G
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no322_a20.g1 MSMg01no322_a20.g1 CHROMAT_FILE:
MSMg01no322_a20.g1 PHD_FILE: MSMg01no322_a20.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:04:56 2005
         (360 letters)



>mm_chr12_36102214_36102972
          Length = 759

 Score =  652 bits (337), Expect = 0.0
 Identities = 354/365 (96%), Gaps = 11/365 (3%)
 Strand = Plus / Plus

                                                                       
Query: 1   tttattttttaaaaagagaagtggatcacatg--ccccccca---aattatttataaaga 55
           ||||||||||||||||||||||||||||||||  |      |   |||||||||||||||
Sbjct: 201 tttattttttaaaaagagaagtggatcacatgttc------aggaaattatttataaaga 254

                                                                       
Query: 56  ttcaagatggacaaataagacacctagcactcacctcttctttccccaaagaaccaaaat 115
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 255 ttcaagatggacaaataagacacctagcactcacctcttctttccccaaagaaccaaaat 314

                                                                       
Query: 116 aatagacacacatgtggttgtgtttttgaggttagtgaccagaggggaacacagtaaaca 175
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 315 aatagacacacatgtggttgtgtttttgaggttagtgaccagaggggaacacagtaaaca 374

                                                                       
Query: 176 agacagagcctagactattgcaagacttagaaaacttagcctattagtgataacaccaca 235
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 375 agacagagcctagactattgcaagacttagaaaacttagcctattagtgataacaccaca 434

                                                                       
Query: 236 gacagagaaacaaaaattccctaggactgccatcacggttccaaagccaggggacggtga 295
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 435 gacagagaaacaaaaattccctaggactgccatcacggttccaaagccaggggacggtga 494

                                                                       
Query: 296 atttccttctcaaaggtcagggtgaaagagaaagttccagaaaacaccaccagtgaggaa 355
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 495 atttccttctcaaaggtcagggtgaaagagaaagttccagaaaacaccaccagtgaggaa 554

                
Query: 356 actgg 360
           |||||
Sbjct: 555 actgg 559


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 360
Length of database: 759
Length adjustment: 9
Effective length of query: 351
Effective length of database: 750
Effective search space:   263250
Effective search space used:   263250
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)